(29 nodes) PAS domain network (Clostridium citroniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFS22814.1	Diguanylate cyclase/phosphodiesterase. (553 aa)
	SFS23406.1	PAS domain S-box-containing protein. (664 aa)
	SFS23263.1	Diguanylate cyclase (GGDEF) domain-containing protein. (1031 aa)
	SFS23286.1	Iron only hydrogenase large subunit, C-terminal domain. (698 aa)
	SFS22813.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (516 aa)
	SFS22745.1	PAS domain S-box-containing protein. (1196 aa)
	SFS22744.1	PAS domain S-box-containing protein. (1445 aa)
	SFS22695.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (1375 aa)
	SFS22675.1	PAS domain S-box-containing protein. (637 aa)
	SFS22358.1	Transcriptional regulator, propionate catabolism operon regulatory protein. (631 aa)
	SFS21844.1	Putative two-component system response regulator. (1261 aa)
	SFS21674.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (1553 aa)
	SFS20709.1	Putative two-component system response regulator. (978 aa)
	SFS20620.1	PAS domain S-box-containing protein. (1426 aa)
	SFS20615.1	PAS domain S-box-containing protein. (1201 aa)
	SFS17181.1	PAS domain S-box-containing protein. (1299 aa)
	SFS15567.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (854 aa)
	SFS15315.1	Diguanylate cyclase (GGDEF) domain-containing protein. (1324 aa)
	SFS12193.1	PAS domain-containing protein. (560 aa)
	SFS12150.1	PAS domain S-box-containing protein. (798 aa)
	SFS11376.1	PAS domain S-box-containing protein. (960 aa)
	SFS01191.1	Diguanylate cyclase (GGDEF) domain-containing protein. (1117 aa)
	SFS04454.1	PAS domain S-box-containing protein. (465 aa)
	SFS02982.1	PAS domain S-box-containing protein. (664 aa)
	SFR94006.1	PAS domain S-box-containing protein. (1016 aa)
	SFR93101.1	PAS domain S-box-containing protein. (647 aa)
	SFR92907.1	PAS domain S-box-containing protein. (169 aa)
	SFR88948.1	PAS domain S-box-containing protein. (587 aa)
	SFR87248.1	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (311 aa)

Your Current Organism:

Clostridium citroniae

NCBI taxonomy Id: 358743
Other names: CCUG 52203, Clostridium citroniae Warren et al. 2007, DSM 19261, [. citroniae, [Clostridium] citroniae, strain RMA 16102

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFR87248.1	SFR92907.1	SAMN05216568_101339	SAMN05216568_101772	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.560
SFR87248.1	SFR94006.1	SAMN05216568_101339	SAMN05216568_101910	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.965
SFR87248.1	SFS01191.1	SAMN05216568_101339	SAMN05216568_10271	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.992
SFR87248.1	SFS11376.1	SAMN05216568_101339	SAMN05216568_103257	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.991
SFR87248.1	SFS12150.1	SAMN05216568_101339	SAMN05216568_103344	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.968
SFR87248.1	SFS12193.1	SAMN05216568_101339	SAMN05216568_103349	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain-containing protein.	0.491
SFR87248.1	SFS15315.1	SAMN05216568_101339	SAMN05216568_104118	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.801
SFR87248.1	SFS15567.1	SAMN05216568_101339	SAMN05216568_104165	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.899
SFR87248.1	SFS17181.1	SAMN05216568_101339	SAMN05216568_104463	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.992
SFR87248.1	SFS20615.1	SAMN05216568_101339	SAMN05216568_106284	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.992
SFR87248.1	SFS20620.1	SAMN05216568_101339	SAMN05216568_106286	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.991
SFR87248.1	SFS20709.1	SAMN05216568_101339	SAMN05216568_106326	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Putative two-component system response regulator.	0.964
SFR87248.1	SFS21674.1	SAMN05216568_101339	SAMN05216568_107206	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.958
SFR87248.1	SFS21844.1	SAMN05216568_101339	SAMN05216568_107255	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Putative two-component system response regulator.	0.962
SFR87248.1	SFS22695.1	SAMN05216568_101339	SAMN05216568_109167	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.978
SFR87248.1	SFS22744.1	SAMN05216568_101339	SAMN05216568_109216	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.991
SFR87248.1	SFS22745.1	SAMN05216568_101339	SAMN05216568_109217	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein.	0.992
SFR87248.1	SFS22813.1	SAMN05216568_101339	SAMN05216568_11052	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	0.760
SFR87248.1	SFS22814.1	SAMN05216568_101339	SAMN05216568_11053	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase/phosphodiesterase.	0.902
SFR87248.1	SFS23263.1	SAMN05216568_101339	SAMN05216568_1133	PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.900