(9 nodes) Ribonuclease H-like superfamily network (Clostridium citroniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFS23252.1	Uncharacterized protein. (714 aa)
	SFS23335.1	Hypothetical protein. (365 aa)
	polC	DNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (1539 aa)
	SFR83269.1	Inhibitor of the KinA pathway to sporulation, predicted exonuclease. (323 aa)
	SFS06675.1	DNA polymerase-3 subunit alpha. (240 aa)
	ruvX	Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (148 aa)
	polA	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. (928 aa)
	rnhB	RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (219 aa)
	rnhA	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (160 aa)

Your Current Organism:

Clostridium citroniae

NCBI taxonomy Id: 358743
Other names: CCUG 52203, Clostridium citroniae Warren et al. 2007, DSM 19261, [. citroniae, [Clostridium] citroniae, strain RMA 16102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFR83269.1	SFS23335.1	SAMN05216568_10111	SAMN05216568_11375	Inhibitor of the KinA pathway to sporulation, predicted exonuclease.	Hypothetical protein.	0.671
SFS06675.1	polA	SAMN05216568_102580	SAMN05216568_104431	DNA polymerase-3 subunit alpha.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.567
SFS06675.1	polC	SAMN05216568_102580	SAMN05216568_104364	DNA polymerase-3 subunit alpha.	DNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.898
SFS23335.1	SFR83269.1	SAMN05216568_11375	SAMN05216568_10111	Hypothetical protein.	Inhibitor of the KinA pathway to sporulation, predicted exonuclease.	0.671
polA	SFS06675.1	SAMN05216568_104431	SAMN05216568_102580	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	DNA polymerase-3 subunit alpha.	0.567
polA	polC	SAMN05216568_104431	SAMN05216568_104364	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	DNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.496
polA	rnhA	SAMN05216568_104431	SAMN05216568_106229	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.955
polA	rnhB	SAMN05216568_104431	SAMN05216568_106212	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.858
polC	SFS06675.1	SAMN05216568_104364	SAMN05216568_102580	DNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	DNA polymerase-3 subunit alpha.	0.898
polC	polA	SAMN05216568_104364	SAMN05216568_104431	DNA polymerase III catalytic subunit, PolC type; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.496
rnhA	polA	SAMN05216568_106229	SAMN05216568_104431	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.955
rnhA	rnhB	SAMN05216568_106229	SAMN05216568_106212	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.900
rnhB	polA	SAMN05216568_106212	SAMN05216568_104431	RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.858
rnhB	rnhA	SAMN05216568_106212	SAMN05216568_106229	RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.900