(12 nodes) DEAD-like helicases superfamily network (Clostridium citroniae)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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Predicted Interactions

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Your Input:
	SFS23453.1	ATP-dependent RNA helicase DbpA. (486 aa)
	SFS19256.1	Helicase conserved C-terminal domain-containing protein. (829 aa)
	recG	ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (685 aa)
	uvrB	Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (660 aa)
	SFS22165.1	Helicase conserved C-terminal domain-containing protein. (1052 aa)
	SFS23435.1	Superfamily II DNA or RNA helicase. (752 aa)
	cas3	CRISPR-associated endonuclease/helicase Cas3. (718 aa)
	recQ	ATP-dependent DNA helicase RecQ. (787 aa)
	SFR95196.1	ATP-dependent helicase Lhr and Lhr-like helicase. (1403 aa)
	mfd	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1184 aa)
	priA	Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (752 aa)
	SFS15178.1	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. (569 aa)

Your Current Organism:

Clostridium citroniae

NCBI taxonomy Id: 358743
Other names: CCUG 52203, Clostridium citroniae Warren et al. 2007, DSM 19261, [. citroniae, [Clostridium] citroniae, strain RMA 16102

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFR95196.1	SFS19256.1	SAMN05216568_1011077	SAMN05216568_105277	ATP-dependent helicase Lhr and Lhr-like helicase.	Helicase conserved C-terminal domain-containing protein.	0.424
SFS15178.1	SFS22165.1	SAMN05216568_10497	SAMN05216568_10856	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	Helicase conserved C-terminal domain-containing protein.	0.966
SFS15178.1	SFS23453.1	SAMN05216568_10497	SAMN05216568_11485	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase DbpA.	0.889
SFS15178.1	recQ	SAMN05216568_10497	SAMN05216568_1011007	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	ATP-dependent DNA helicase RecQ.	0.938
SFS19256.1	SFR95196.1	SAMN05216568_105277	SAMN05216568_1011077	Helicase conserved C-terminal domain-containing protein.	ATP-dependent helicase Lhr and Lhr-like helicase.	0.424
SFS19256.1	SFS22165.1	SAMN05216568_105277	SAMN05216568_10856	Helicase conserved C-terminal domain-containing protein.	Helicase conserved C-terminal domain-containing protein.	0.980
SFS19256.1	SFS23435.1	SAMN05216568_105277	SAMN05216568_11467	Helicase conserved C-terminal domain-containing protein.	Superfamily II DNA or RNA helicase.	0.504
SFS22165.1	SFS15178.1	SAMN05216568_10856	SAMN05216568_10497	Helicase conserved C-terminal domain-containing protein.	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	0.966
SFS22165.1	SFS19256.1	SAMN05216568_10856	SAMN05216568_105277	Helicase conserved C-terminal domain-containing protein.	Helicase conserved C-terminal domain-containing protein.	0.980
SFS22165.1	SFS23435.1	SAMN05216568_10856	SAMN05216568_11467	Helicase conserved C-terminal domain-containing protein.	Superfamily II DNA or RNA helicase.	0.980
SFS22165.1	SFS23453.1	SAMN05216568_10856	SAMN05216568_11485	Helicase conserved C-terminal domain-containing protein.	ATP-dependent RNA helicase DbpA.	0.966
SFS22165.1	recQ	SAMN05216568_10856	SAMN05216568_1011007	Helicase conserved C-terminal domain-containing protein.	ATP-dependent DNA helicase RecQ.	0.940
SFS22165.1	uvrB	SAMN05216568_10856	SAMN05216568_108184	Helicase conserved C-terminal domain-containing protein.	Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]	0.409
SFS23435.1	SFS19256.1	SAMN05216568_11467	SAMN05216568_105277	Superfamily II DNA or RNA helicase.	Helicase conserved C-terminal domain-containing protein.	0.504
SFS23435.1	SFS22165.1	SAMN05216568_11467	SAMN05216568_10856	Superfamily II DNA or RNA helicase.	Helicase conserved C-terminal domain-containing protein.	0.980
SFS23435.1	cas3	SAMN05216568_11467	SAMN05216568_11469	Superfamily II DNA or RNA helicase.	CRISPR-associated endonuclease/helicase Cas3.	0.636
SFS23453.1	SFS15178.1	SAMN05216568_11485	SAMN05216568_10497	ATP-dependent RNA helicase DbpA.	ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.	0.889
SFS23453.1	SFS22165.1	SAMN05216568_11485	SAMN05216568_10856	ATP-dependent RNA helicase DbpA.	Helicase conserved C-terminal domain-containing protein.	0.966
SFS23453.1	recQ	SAMN05216568_11485	SAMN05216568_1011007	ATP-dependent RNA helicase DbpA.	ATP-dependent DNA helicase RecQ.	0.926
cas3	SFS23435.1	SAMN05216568_11469	SAMN05216568_11467	CRISPR-associated endonuclease/helicase Cas3.	Superfamily II DNA or RNA helicase.	0.636