(6 nodes) Resolvase, N terminal domain network (Clostridium citroniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SFS18947.1	Site-specific DNA recombinase. (538 aa)
	SFS19149.1	Site-specific DNA recombinase. (563 aa)
	SFS19345.1	Site-specific DNA recombinase. (566 aa)
	SFS19348.1	Site-specific DNA recombinase. (554 aa)
	SFS19340.1	Site-specific DNA recombinase. (310 aa)
	SFS10860.1	Site-specific DNA recombinase. (503 aa)

Your Current Organism:

Clostridium citroniae

NCBI taxonomy Id: 358743
Other names: CCUG 52203, Clostridium citroniae Warren et al. 2007, DSM 19261, [. citroniae, [Clostridium] citroniae, strain RMA 16102

Send network to Cytoscape

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFS19340.1	SFS19345.1	SAMN05216568_105300	SAMN05216568_105301	Site-specific DNA recombinase.	Site-specific DNA recombinase.	0.835
SFS19340.1	SFS19348.1	SAMN05216568_105300	SAMN05216568_105302	Site-specific DNA recombinase.	Site-specific DNA recombinase.	0.820
SFS19345.1	SFS19340.1	SAMN05216568_105301	SAMN05216568_105300	Site-specific DNA recombinase.	Site-specific DNA recombinase.	0.835
SFS19345.1	SFS19348.1	SAMN05216568_105301	SAMN05216568_105302	Site-specific DNA recombinase.	Site-specific DNA recombinase.	0.830
SFS19348.1	SFS19340.1	SAMN05216568_105302	SAMN05216568_105300	Site-specific DNA recombinase.	Site-specific DNA recombinase.	0.820
SFS19348.1	SFS19345.1	SAMN05216568_105302	SAMN05216568_105301	Site-specific DNA recombinase.	Site-specific DNA recombinase.	0.830