(67 nodes) Arginine and proline metabolism network (Streptomyces olindensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DF19_06200	Proline racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	DF19_29735	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	DF19_29850	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	DF19_29855	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	DF19_30010	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	DF19_30390	Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)
	DF19_31100	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	DF19_32290	Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	DF19_32755	Gamma-glutamyl phosphate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	DF19_32765	Gamma-glutamyl kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	DF19_33420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (214 aa)
	DF19_33430	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	DF19_34385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	DF19_36940	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa)
	DF19_37255	Amidase; Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
	DF19_37525	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	DF19_38560	Methylhydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	DF19_38565	Hydantoin utilization protein B; Derived by automated computational analysis using gene prediction method: Protein Homology. (559 aa)
	DF19_39840	CMP deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)
	DF19_40065	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (412 aa)
	DF19_41080	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
	DF19_41905	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	DF19_42820	Pyrroline-5-carboxylate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	rocD	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (420 aa)
	DF19_24780	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	DF19_24600	Beta-carotene 15,15'-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
	DF19_24305	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (73 aa)
	DF19_24200	Monoamine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	DF19_23890	Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
	DF19_23190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (194 aa)
	DF19_22615	Betaine-aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	DF19_21755	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	DF19_21475	Amidase; Catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	DF19_21160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	DF19_20295	Amidinotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
	DF19_17945	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	DF19_17900	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (481 aa)
	DF19_17395	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	DF19_17345	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	DF19_17165	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
	DF19_15685	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	DF19_15105	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	DF19_14495	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	DF19_14255	Monoamine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (679 aa)
	DF19_13560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (80 aa)
	DF19_11130	Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	DF19_11020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	DF19_10925	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	DF19_10570	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
	DF19_09440	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	DF19_09210	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	DF19_07585	Spermine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	DF19_06220	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	DF19_06215	Proline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
	DF19_06210	Oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
	DF19_06205	Dihydrodipicolinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	DF19_26975	Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	DF19_05875	Arginine decarboxylase; Biodegradative; catalyzes the formation of agmatine from arginine; Derived by automated computational analysis using gene prediction method: Protein Homology. (800 aa)
	DF19_05780	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	DF19_05755	Amino acid oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	DF19_04725	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	DF19_04040	Agmatine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	DF19_03990	1-pyrroline-5-carboxylate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)
	DF19_03985	Proline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	DF19_03615	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	DF19_03050	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	DF19_02425	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)

Your Current Organism:

Streptomyces olindensis

NCBI taxonomy Id: 358823
Other names: S. olindensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DF19_02425	DF19_33420	DF19_02425	DF19_33420	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.520
DF19_03050	DF19_04040	DF19_03050	DF19_04040	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agmatine deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
DF19_03050	DF19_05780	DF19_03050	DF19_05780	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
DF19_03050	DF19_05875	DF19_03050	DF19_05875	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine decarboxylase; Biodegradative; catalyzes the formation of agmatine from arginine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
DF19_03050	DF19_09210	DF19_03050	DF19_09210	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
DF19_03050	DF19_10570	DF19_03050	DF19_10570	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
DF19_03050	DF19_17395	DF19_03050	DF19_17395	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.571
DF19_03050	DF19_23890	DF19_03050	DF19_23890	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.775
DF19_03050	DF19_30390	DF19_03050	DF19_30390	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
DF19_03050	DF19_32290	DF19_03050	DF19_32290	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
DF19_03050	DF19_37525	DF19_03050	DF19_37525	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
DF19_03050	rocD	DF19_03050	DF19_25355	Spermidine synthase-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
DF19_03615	DF19_14495	DF19_03615	DF19_14495	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
DF19_03615	DF19_42820	DF19_03615	DF19_42820	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyrroline-5-carboxylate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
DF19_03985	DF19_03990	DF19_03985	DF19_03990	Proline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	1-pyrroline-5-carboxylate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
DF19_03985	DF19_05780	DF19_03985	DF19_05780	Proline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
DF19_03985	DF19_06200	DF19_03985	DF19_06200	Proline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Proline racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
DF19_03985	DF19_09210	DF19_03985	DF19_09210	Proline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
DF19_03985	DF19_09440	DF19_03985	DF19_09440	Proline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
DF19_03985	DF19_10570	DF19_03985	DF19_10570	Proline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656