(94 nodes) Mixed, incl. Branched-chain amino acid transport system / permease component, and Carbohydrate transport network (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AQS61053.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	AQS61054.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (60 aa)
	AQS61055.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
	AQS61056.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
	AQS61057.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	AQS61058.1	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	AQS61434.1	DNA-binding transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AQS61437.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (326 aa)
	AQS61438.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	AQS61439.1	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)
	mgsA	Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate. (127 aa)
	fur-2	Transcriptional repressor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family. (139 aa)
	AQS63059.1	Nucleoside/nucleotide kinase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	AQS63060.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AQS63061.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	AQS63062.1	Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	AQS63063.1	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	AQS63426.1	DUF4432 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	AQS63427.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AQS63428.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AQS63429.1	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	AQS63430.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	AQS65176.1	DeoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	AQS63431.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)
	AQS63463.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	AQS63464.1	Dolichol monophosphate mannose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	AQS63465.1	Nucleoside/nucleotide kinase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	AQS63466.1	D-tagatose 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AQS63467.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	AQS63468.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	AQS63469.1	Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)
	AQS63470.1	Autoinducer 2 ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AQS63643.1	Rhizopine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	AQS63644.1	Rhizopine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	AQS63645.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	AQS63711.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	AQS63712.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AQS63713.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	AQS63734.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	AQS63735.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (507 aa)
	AQS63736.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	YjfF	Sugar ABC transporter permease YjfF; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	xylA	Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (436 aa)
	xylB	Xylulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	AQS63766.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	AQS63860.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	AQS63861.1	AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	AQS63862.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	AQS63863.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AQS63864.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	AQS63865.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
	AQS65223.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	AQS63941.1	Ribose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AQS63942.1	Ribonucleotide-diphosphate reductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
	AQS63943.1	Ribose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	AQS63944.1	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AQS64043.1	Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; Quinoprotein glucose dehydrogenase; catalyzes the formation of D-glucono-1,5-lactone from D-glucose and ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology. (778 aa)
	AQS64127.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	AQS64128.1	Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)
	AQS65259.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
	AQS64129.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	AQS64130.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	AQS64131.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (313 aa)
	AQS64132.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (315 aa)
	AQS64133.1	Gluconolactonase; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AQS64308.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	AQS64309.1	D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)
	AQS64310.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AQS65278.1	Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AQS64311.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AQS65279.1	Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AQS64313.1	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)
	AQS65307.1	Rhizopine-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AQS64566.1	D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
	AQS64567.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	AQS64617.1	Dihydroxyacetone kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (564 aa)
	AQS64674.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	xylF	D-xylose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	AQS64676.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	AQS64677.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AQS64684.1	NagC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	AQS64739.1	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
	rhaM	L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose. (107 aa)
	AQS64741.1	Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (334 aa)
	AQS65337.1	Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (333 aa)
	rbsA	D-xylose ABC transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (510 aa)
	AQS64742.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (66 aa)
	rhaS	Rhamnose ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	AQS64744.1	DeoR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AQS64745.1	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (698 aa)
	rhaI	L-rhamnose catabolism isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
	B0909_21910	Hypothetical protein; Frameshifted; incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	rbsA-2	D-xylose ABC transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (513 aa)
	AQS64874.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (343 aa)

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQS61054.1	AQS61055.1	B0909_01315	B0909_01320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AQS61054.1	AQS61056.1	B0909_01315	B0909_01325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AQS61054.1	AQS61057.1	B0909_01315	B0909_01330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AQS61055.1	AQS61054.1	B0909_01320	B0909_01315	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AQS61055.1	AQS61056.1	B0909_01320	B0909_01325	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AQS61055.1	AQS61057.1	B0909_01320	B0909_01330	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
AQS61055.1	AQS61058.1	B0909_01320	B0909_01335	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
AQS61055.1	AQS63734.1	B0909_01320	B0909_15305	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
AQS61055.1	AQS63736.1	B0909_01320	B0909_15315	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AQS61055.1	AQS64674.1	B0909_01320	B0909_20765	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
AQS61055.1	AQS64676.1	B0909_01320	B0909_20775	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AQS61055.1	YjfF	B0909_01320	B0909_15320	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease YjfF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.526
AQS61056.1	AQS61054.1	B0909_01325	B0909_01315	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AQS61056.1	AQS61055.1	B0909_01325	B0909_01320	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
AQS61056.1	AQS61057.1	B0909_01325	B0909_01330	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AQS61056.1	AQS61058.1	B0909_01325	B0909_01335	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GguC protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652
AQS61056.1	AQS61437.1	B0909_01325	B0909_03520	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.501
AQS61056.1	AQS63427.1	B0909_01325	B0909_13560	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
AQS61056.1	AQS63428.1	B0909_01325	B0909_13565	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
AQS61056.1	AQS63467.1	B0909_01325	B0909_13795	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475

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