STRINGSTRING
AQS65124.1 AQS65124.1 AQS64836.1 AQS64836.1 aspA aspA AQS64363.1 AQS64363.1 AQS64362.1 AQS64362.1 AcnA AcnA AQS64083.1 AQS64083.1 CydB CydB cydX cydX AQS63850.1 AQS63850.1 AQS63847.1 AQS63847.1 AQS63499.1 AQS63499.1 cyoC cyoC cyoB cyoB ubiE ubiE AQS62713.1 AQS62713.1 ctaD ctaD AQS62464.1 AQS62464.1 Mqo Mqo AQS62342.1 AQS62342.1 AQS62030.1 AQS62030.1 nuoH nuoH nuoI nuoI nuoK nuoK AQS62025.1 AQS62025.1 AQS62024.1 AQS62024.1 NuoN NuoN gltA gltA AQS61872.1 AQS61872.1 CcoP CcoP CcoN CcoN fumC fumC AQS61462.1 AQS61462.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AQS65124.1Bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (929 aa)
AQS64836.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
aspAAspartate ammonia-lyase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
AQS64363.1Citrate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
AQS64362.1Citrate synthase/methylcitrate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
AcnAAconitate hydratase 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (871 aa)
AQS64083.1Cytochrome d terminal oxidase subunit 1; Part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
CydBCytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
cydXCyd operon protein YbgT; Derived by automated computational analysis using gene prediction method: Protein Homology. (40 aa)
AQS63850.1Nitric-oxide reductase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
AQS63847.1NorE accessory protein for nitric oxide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
AQS63499.1Formate dehydrogenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (960 aa)
cyoCCytochrome o ubiquinol oxidase subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
cyoBCytochrome o ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the heme-copper respiratory oxidase family. (667 aa)
ubiEBifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (258 aa)
AQS62713.1Monovalent cation/H+ antiporter subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
ctaDCytochrome c oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (566 aa)
AQS62464.1Cytochrome c oxidase subunit 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
MqoMalate:quinone oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (544 aa)
AQS62342.1Na+/H+ antiporter subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
AQS62030.1NADH-quinone oxidoreductase subunit G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (693 aa)
nuoHNADH-quinone oxidoreductase subunit H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (348 aa)
nuoINADH-quinone oxidoreductase subunit I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (163 aa)
nuoKNADH-quinone oxidoreductase subunit K; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (102 aa)
AQS62025.1NADH-quinone oxidoreductase subunit L; Derived by automated computational analysis using gene prediction method: Protein Homology. (665 aa)
AQS62024.1NADH-quinone oxidoreductase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)
NuoNNADH-quinone oxidoreductase subunit N; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
gltACitrate (Si)-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the citrate synthase family. (429 aa)
AQS61872.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
CcoPCytochrome-c oxidase, cbb3-type subunit III; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
CcoNCytochrome-c oxidase, cbb3-type subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
fumCFumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (463 aa)
AQS61462.1Isocitrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the isocitrate and isopropylmalate dehydrogenases family. (404 aa)
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, LMG:150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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