STRINGSTRING
dapL dapL serC serC cobD_1 cobD_1 argD argD gabR_1 gabR_1 glmS glmS ilvK ilvK CUN66334.1 CUN66334.1 pat pat hisC hisC aspC aspC CUN89340.1 CUN89340.1 CUO40251.1 CUO40251.1 patA patA patB patB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dapLLL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. (404 aa)
serCPhosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (362 aa)
cobD_1Threonine-phosphate decarboxylase. (364 aa)
argDAcetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (394 aa)
gabR_1HTH-type transcriptional regulatory protein gabR. (491 aa)
glmSGlucosamine--fructose-6-phosphate aminotransferase [isomerizing]. (606 aa)
ilvKBranched-chain-amino-acid aminotransferase 2. (354 aa)
CUN66334.1Putative aminotransferase MSMEG_6286. (427 aa)
patPutative phenylalanine aminotransferase. (359 aa)
hisCHistidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (352 aa)
aspCAspartate aminotransferase. (398 aa)
CUN89340.1Uncharacterised protein. (60 aa)
CUO40251.1Soluble hydrogenase 42 kDa subunit. (376 aa)
patAPutative aminotransferase A. (391 aa)
patBCystathionine beta-lyase PatB. (400 aa)
Your Current Organism:
Roseburia inulinivorans
NCBI taxonomy Id: 360807
Other names: DSM 16841, NCIMB 14030, R. inulinivorans, Roseburia inulinivorans Duncan et al. 2006, butyrate-producing bacterium A2-194, butyrate-producing bacterium L1-83, strain A2-194
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