12 items (Trichuris trichiura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A077YWH4	Transketolase protein 2 like. (625 aa)
	A0A077YX57	Enolase. (454 aa)
	A0A077Z325	Transaldolase. (323 aa)
	A0A077Z3K7	Phosphoglycerate kinase. (417 aa)
	A0A077Z6Y9	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family. (374 aa)
	A0A077ZC84	Triosephosphate isomerase. (248 aa)
	A0A077ZEA4	Pyruvate kinase; Belongs to the pyruvate kinase family. (574 aa)
	A0A077ZHV3	Glyceraldehyde-3-phosphate dehydrogenase. (344 aa)
	A0A077ZIX8	Glucose-6-phosphate isomerase; Belongs to the GPI family. (553 aa)
	A0A077ZJ41	Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (336 aa)
	A0A077ZLG6	F bP aldolase and UPF0047 and TIM domain containi ng protein. (573 aa)
	A0A077ZPT8	Fructose-bisphosphate aldolase. (284 aa)

Your Current Organism:

Trichuris trichiura

NCBI taxonomy Id: 36087
Other names: T. trichiura, human whipworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A077YWH4	A0A077YX57	Transketolase protein 2 like.	Enolase.	0.969
A0A077YWH4	A0A077Z325	Transketolase protein 2 like.	Transaldolase.	0.987
A0A077YWH4	A0A077Z3K7	Transketolase protein 2 like.	Phosphoglycerate kinase.	0.957
A0A077YWH4	A0A077Z6Y9	Transketolase protein 2 like.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.929
A0A077YWH4	A0A077ZC84	Transketolase protein 2 like.	Triosephosphate isomerase.	0.960
A0A077YWH4	A0A077ZEA4	Transketolase protein 2 like.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.949
A0A077YWH4	A0A077ZHV3	Transketolase protein 2 like.	Glyceraldehyde-3-phosphate dehydrogenase.	0.955
A0A077YWH4	A0A077ZIX8	Transketolase protein 2 like.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.973
A0A077YWH4	A0A077ZJ41	Transketolase protein 2 like.	Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.955
A0A077YWH4	A0A077ZLG6	Transketolase protein 2 like.	F bP aldolase and UPF0047 and TIM domain containi ng protein.	0.959
A0A077YWH4	A0A077ZPT8	Transketolase protein 2 like.	Fructose-bisphosphate aldolase.	0.959
A0A077YX57	A0A077YWH4	Enolase.	Transketolase protein 2 like.	0.969
A0A077YX57	A0A077Z325	Enolase.	Transaldolase.	0.906
A0A077YX57	A0A077Z3K7	Enolase.	Phosphoglycerate kinase.	0.994
A0A077YX57	A0A077Z6Y9	Enolase.	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family.	0.946
A0A077YX57	A0A077ZC84	Enolase.	Triosephosphate isomerase.	0.998
A0A077YX57	A0A077ZEA4	Enolase.	Pyruvate kinase; Belongs to the pyruvate kinase family.	0.989
A0A077YX57	A0A077ZHV3	Enolase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.985
A0A077YX57	A0A077ZIX8	Enolase.	Glucose-6-phosphate isomerase; Belongs to the GPI family.	0.985
A0A077YX57	A0A077ZJ41	Enolase.	Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.985