(10 nodes) poly(A)+ mRNA export from nucleus network (Trichuris trichiura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A077Z5L9	ATP dependent RNA helicase DDX19A; Belongs to the DEAD box helicase family. (447 aa)
	A0A077YZU7	Nuclear RNA export factor 1. (610 aa)
	A0A077ZMQ0	Uncharacterized protein. (124 aa)
	A0A077Z5G5	Uncharacterized protein. (186 aa)
	A0A077ZMP4	PCI domain containing protein. (221 aa)
	A0A077ZDX8	Uncharacterized protein. (241 aa)
	A0A077ZBC8	Nuclear pore protein. (714 aa)
	A0A077Z9M4	PCI domain containing protein. (332 aa)
	A0A077Z606	Nuclear pore complex protein Nup133. (1014 aa)
	A0A077Z4Y6	Uncharacterized protein. (318 aa)

Your Current Organism:

Trichuris trichiura

NCBI taxonomy Id: 36087
Other names: T. trichiura, human whipworm

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A077YZU7	A0A077Z5G5	Nuclear RNA export factor 1.	Uncharacterized protein.	0.445
A0A077YZU7	A0A077Z5L9	Nuclear RNA export factor 1.	ATP dependent RNA helicase DDX19A; Belongs to the DEAD box helicase family.	0.833
A0A077YZU7	A0A077Z606	Nuclear RNA export factor 1.	Nuclear pore complex protein Nup133.	0.930
A0A077YZU7	A0A077Z9M4	Nuclear RNA export factor 1.	PCI domain containing protein.	0.445
A0A077YZU7	A0A077ZBC8	Nuclear RNA export factor 1.	Nuclear pore protein.	0.911
A0A077YZU7	A0A077ZMP4	Nuclear RNA export factor 1.	PCI domain containing protein.	0.445
A0A077YZU7	A0A077ZMQ0	Nuclear RNA export factor 1.	Uncharacterized protein.	0.445
A0A077Z5G5	A0A077YZU7	Uncharacterized protein.	Nuclear RNA export factor 1.	0.445
A0A077Z5L9	A0A077YZU7	ATP dependent RNA helicase DDX19A; Belongs to the DEAD box helicase family.	Nuclear RNA export factor 1.	0.833
A0A077Z606	A0A077YZU7	Nuclear pore complex protein Nup133.	Nuclear RNA export factor 1.	0.930
A0A077Z606	A0A077ZBC8	Nuclear pore complex protein Nup133.	Nuclear pore protein.	0.995
A0A077Z9M4	A0A077YZU7	PCI domain containing protein.	Nuclear RNA export factor 1.	0.445
A0A077ZBC8	A0A077YZU7	Nuclear pore protein.	Nuclear RNA export factor 1.	0.911
A0A077ZBC8	A0A077Z606	Nuclear pore protein.	Nuclear pore complex protein Nup133.	0.995
A0A077ZMP4	A0A077YZU7	PCI domain containing protein.	Nuclear RNA export factor 1.	0.445
A0A077ZMQ0	A0A077YZU7	Uncharacterized protein.	Nuclear RNA export factor 1.	0.445