60 items (Trichuris trichiura) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A077ZFI1	Tigger transposable element derived 6. (211 aa)
	A0A077ZK04	BrkDBD and HTH Tnp Tc5 domain containing protein. (149 aa)
	A0A077ZKX3	Uncharacterized protein. (311 aa)
	A0A077ZKZ6	Uncharacterized protein. (127 aa)
	A0A077ZL03	Uncharacterized protein. (79 aa)
	A0A077ZM01	Uncharacterized protein. (211 aa)
	A0A077ZL13	Uncharacterized protein. (344 aa)
	A0A077ZL26	Uncharacterized protein. (75 aa)
	A0A077ZFF1	Uncharacterized protein. (84 aa)
	A0A077Z7B8	Uncharacterized protein. (87 aa)
	A0A077ZR44	Uncharacterized protein. (167 aa)
	A0A077ZQV9	Tigger transposable element derived protein. (280 aa)
	A0A077ZNM6	Uncharacterized protein. (78 aa)
	A0A077ZN57	Uncharacterized protein. (172 aa)
	A0A077ZN25	Uncharacterized protein. (78 aa)
	A0A077ZMW2	BrkDBD and DDE 1 and HTH Tnp Tc5 domain containin g protein. (324 aa)
	A0A077ZMW1	Uncharacterized protein. (98 aa)
	A0A077ZMQ8	Uncharacterized protein. (375 aa)
	A0A077ZML1	Uncharacterized protein. (500 aa)
	A0A077ZMJ6	Uncharacterized protein. (153 aa)
	A0A077ZM42	Uncharacterized protein. (333 aa)
	A0A077ZL33	Uncharacterized protein. (192 aa)
	A0A077Z231	Sentrin. (194 aa)
	A0A077Z4X2	Uncharacterized protein. (100 aa)
	A0A077Z5F1	Uncharacterized protein. (94 aa)
	A0A077Z6W6	Uncharacterized protein. (108 aa)
	A0A077Z701	Rad60-SLD domain containing protein. (238 aa)
	A0A077ZJV2	Uncharacterized protein. (215 aa)
	A0A077ZJV0	Ubiquitin activating enzyme E1. (506 aa)
	A0A077ZJR6	Uncharacterized protein. (141 aa)
	A0A077ZJD1	Uncharacterized protein. (224 aa)
	A0A077ZL37	Uncharacterized protein. (378 aa)
	A0A077ZLC2	Uncharacterized protein. (304 aa)
	A0A077ZLI8	Uncharacterized protein. (82 aa)
	A0A077ZLJ8	Uncharacterized protein. (342 aa)
	A0A077ZLL8	Uncharacterized protein. (196 aa)
	A0A077ZLN2	Uncharacterized protein. (441 aa)
	A0A077ZLT4	Uncharacterized protein. (170 aa)
	A0A077ZLT9	Uncharacterized protein. (192 aa)
	A0A077ZEW1	BrkDBD domain containing protein. (135 aa)
	A0A077ZE38	Uncharacterized protein. (304 aa)
	A0A077ZAQ8	Uncharacterized protein. (69 aa)
	A0A077ZA47	BrkDBD domain containing protein. (141 aa)
	A0A077Z8X6	HTH Tnp Tc5 and BrkDBD domain containing protein. (160 aa)
	A0A077Z1E7	RWD and DUF1115 domain containing protein. (591 aa)
	A0A077ZF03	Uncharacterized protein. (137 aa)
	A0A077ZF49	Uncharacterized protein. (78 aa)
	A0A077Z1B6	BrkDBD domain containing protein. (73 aa)
	A0A077Z0D1	Small ubiquitin-related modifier. (99 aa)
	A0A077ZJC3	HTH Tnp Tc5 and BrkDBD domain containing protein. (192 aa)
	A0A077ZJ25	Tigger transposable element derived protein. (142 aa)
	A0A077ZJ00	CENP-B N and HTH Tnp Tc5 domain containing protei n. (302 aa)
	A0A077ZIU5	Uncharacterized protein. (66 aa)
	A0A077ZI37	Uncharacterized protein. (81 aa)
	A0A077ZHD4	Uncharacterized protein. (91 aa)
	A0A077ZHC7	Uncharacterized protein. (130 aa)
	A0A077ZGL7	Uncharacterized protein. (156 aa)
	A0A077ZG56	Ubiquitin modifier. (95 aa)
	A0A077Z706	SUMO activating enzyme subunit 1. (310 aa)
	A0A077ZFE2	Uncharacterized protein. (119 aa)

Your Current Organism:

Trichuris trichiura

NCBI taxonomy Id: 36087
Other names: T. trichiura, human whipworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A077Z0D1	A0A077Z231	Small ubiquitin-related modifier.	Sentrin.	0.987
A0A077Z0D1	A0A077Z706	Small ubiquitin-related modifier.	SUMO activating enzyme subunit 1.	0.992
A0A077Z0D1	A0A077ZJV0	Small ubiquitin-related modifier.	Ubiquitin activating enzyme E1.	0.999
A0A077Z231	A0A077Z0D1	Sentrin.	Small ubiquitin-related modifier.	0.987
A0A077Z231	A0A077Z701	Sentrin.	Rad60-SLD domain containing protein.	0.968
A0A077Z231	A0A077Z706	Sentrin.	SUMO activating enzyme subunit 1.	0.583
A0A077Z231	A0A077ZG56	Sentrin.	Ubiquitin modifier.	0.968
A0A077Z231	A0A077ZJV0	Sentrin.	Ubiquitin activating enzyme E1.	0.593
A0A077Z701	A0A077Z231	Rad60-SLD domain containing protein.	Sentrin.	0.968
A0A077Z701	A0A077Z706	Rad60-SLD domain containing protein.	SUMO activating enzyme subunit 1.	0.974
A0A077Z701	A0A077ZJV0	Rad60-SLD domain containing protein.	Ubiquitin activating enzyme E1.	0.968
A0A077Z706	A0A077Z0D1	SUMO activating enzyme subunit 1.	Small ubiquitin-related modifier.	0.992
A0A077Z706	A0A077Z231	SUMO activating enzyme subunit 1.	Sentrin.	0.583
A0A077Z706	A0A077Z701	SUMO activating enzyme subunit 1.	Rad60-SLD domain containing protein.	0.974
A0A077Z706	A0A077ZG56	SUMO activating enzyme subunit 1.	Ubiquitin modifier.	0.974
A0A077Z706	A0A077ZJV0	SUMO activating enzyme subunit 1.	Ubiquitin activating enzyme E1.	0.999
A0A077ZG56	A0A077Z231	Ubiquitin modifier.	Sentrin.	0.968
A0A077ZG56	A0A077Z706	Ubiquitin modifier.	SUMO activating enzyme subunit 1.	0.974
A0A077ZG56	A0A077ZJV0	Ubiquitin modifier.	Ubiquitin activating enzyme E1.	0.968
A0A077ZJ00	A0A077ZJ25	CENP-B N and HTH Tnp Tc5 domain containing protei n.	Tigger transposable element derived protein.	0.418