(16 nodes) Phosphopantetheine attachment site network (Tieghemostelium lacteum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DLAC_09801	Uncharacterized protein. (1226 aa)
	DLAC_11410	Putative fatty acid synthase. (2271 aa)
	DLAC_09615	Putative polyketide synthase. (2357 aa)
	DLAC_09614	Putative polyketide synthase. (2362 aa)
	DLAC_09803	Putative polyketide synthase. (2351 aa)
	DLAC_09368	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (114 aa)
	DLAC_07519	Putative polyketide synthase. (2688 aa)
	DLAC_07582	Carrier domain-containing protein. (977 aa)
	DLAC_04046	Uncharacterized protein. (1198 aa)
	DLAC_02207	Carrier domain-containing protein. (1158 aa)
	DLAC_01556	Putative fatty acid synthase. (2338 aa)
	DLAC_00941	Polyketide synthase. (2130 aa)
	DLAC_00940	Polyketide synthase. (2291 aa)
	DLAC_01043	Putative fatty acid synthase. (2545 aa)
	DLAC_01222	Putative fatty acid synthase. (2311 aa)
	DLAC_01224	Putative fatty acid synthase. (2313 aa)

Your Current Organism:

Tieghemostelium lacteum

NCBI taxonomy Id: 361077
Other names: Dictyostelium lacteum, T. lacteum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLAC_00940	DLAC_07582	A0A152A7D4	A0A151ZCW3	Polyketide synthase.	Carrier domain-containing protein.	0.715
DLAC_00940	DLAC_09368	A0A152A7D4	A0A151Z9V3	Polyketide synthase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.433
DLAC_00941	DLAC_07582	A0A152A7D2	A0A151ZCW3	Polyketide synthase.	Carrier domain-containing protein.	0.710
DLAC_00941	DLAC_09368	A0A152A7D2	A0A151Z9V3	Polyketide synthase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.433
DLAC_01043	DLAC_07582	A0A152A7K2	A0A151ZCW3	Putative fatty acid synthase.	Carrier domain-containing protein.	0.719
DLAC_01043	DLAC_09368	A0A152A7K2	A0A151Z9V3	Putative fatty acid synthase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.433
DLAC_01222	DLAC_07582	A0A152A858	A0A151ZCW3	Putative fatty acid synthase.	Carrier domain-containing protein.	0.716
DLAC_01222	DLAC_09368	A0A152A858	A0A151Z9V3	Putative fatty acid synthase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.433
DLAC_01224	DLAC_07582	A0A152A8C8	A0A151ZCW3	Putative fatty acid synthase.	Carrier domain-containing protein.	0.716
DLAC_01224	DLAC_09368	A0A152A8C8	A0A151Z9V3	Putative fatty acid synthase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.433
DLAC_01556	DLAC_07582	A0A152A5Q6	A0A151ZCW3	Putative fatty acid synthase.	Carrier domain-containing protein.	0.721
DLAC_01556	DLAC_09368	A0A152A5Q6	A0A151Z9V3	Putative fatty acid synthase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.433
DLAC_02207	DLAC_09368	A0A152A4D8	A0A151Z9V3	Carrier domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.404
DLAC_04046	DLAC_09368	A0A151ZRZ2	A0A151Z9V3	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.404
DLAC_07519	DLAC_07582	A0A151ZCR3	A0A151ZCW3	Putative polyketide synthase.	Carrier domain-containing protein.	0.718
DLAC_07519	DLAC_09368	A0A151ZCR3	A0A151Z9V3	Putative polyketide synthase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.433
DLAC_07582	DLAC_00940	A0A151ZCW3	A0A152A7D4	Carrier domain-containing protein.	Polyketide synthase.	0.715
DLAC_07582	DLAC_00941	A0A151ZCW3	A0A152A7D2	Carrier domain-containing protein.	Polyketide synthase.	0.710
DLAC_07582	DLAC_01043	A0A151ZCW3	A0A152A7K2	Carrier domain-containing protein.	Putative fatty acid synthase.	0.719
DLAC_07582	DLAC_01222	A0A151ZCW3	A0A152A858	Carrier domain-containing protein.	Putative fatty acid synthase.	0.716