(10 nodes) FtsX-like permease family, and MacB, ATP-binding domain network (Streptomyces vietnamensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJF65540.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	AJF65541.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (843 aa)
	AJF65578.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (857 aa)
	AJF65579.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	AJF65853.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (696 aa)
	AJF65869.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (797 aa)
	AJF65870.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	AJF66605.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (832 aa)
	AJF68751.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	AJF68752.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)

Your Current Organism:

Streptomyces vietnamensis

NCBI taxonomy Id: 362257
Other names: CCTCC M 205143, CCTCC:M:205143, IAM 15340, JCM 21785, S. vietnamensis, Streptomyces vietnamensis Zhu et al. 2007, strain GIMV4.0001

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJF65540.1	AJF65541.1	SVTN_15080	SVTN_15085	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AJF65540.1	AJF65578.1	SVTN_15080	SVTN_15320	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJF65540.1	AJF65853.1	SVTN_15080	SVTN_17060	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
AJF65540.1	AJF65869.1	SVTN_15080	SVTN_17180	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AJF65540.1	AJF66605.1	SVTN_15080	SVTN_21765	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
AJF65540.1	AJF68752.1	SVTN_15080	SVTN_34905	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
AJF65541.1	AJF65540.1	SVTN_15085	SVTN_15080	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AJF65541.1	AJF65579.1	SVTN_15085	SVTN_15325	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJF65541.1	AJF65870.1	SVTN_15085	SVTN_17185	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
AJF65541.1	AJF68751.1	SVTN_15085	SVTN_34900	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
AJF65578.1	AJF65540.1	SVTN_15320	SVTN_15080	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AJF65578.1	AJF65579.1	SVTN_15320	SVTN_15325	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
AJF65578.1	AJF65869.1	SVTN_15320	SVTN_17180	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AJF65578.1	AJF65870.1	SVTN_15320	SVTN_17185	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AJF65578.1	AJF68751.1	SVTN_15320	SVTN_34900	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
AJF65579.1	AJF65541.1	SVTN_15325	SVTN_15085	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJF65579.1	AJF65578.1	SVTN_15325	SVTN_15320	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
AJF65579.1	AJF65853.1	SVTN_15325	SVTN_17060	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
AJF65579.1	AJF65869.1	SVTN_15325	SVTN_17180	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
AJF65579.1	AJF66605.1	SVTN_15325	SVTN_21765	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799

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