(16 nodes) Cobalamin metabolic process network (Haloquadratum walsbyi DSM 16790)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cbiP	Adenosylcobyrate synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (594 aa)
	cobA	cob(I)alamin adenosyltransferase. (243 aa)
	cbiZ	Adenosylcobinamide amidohydrolase. (340 aa)
	cbiA	Cobyrinate a,c-diamide synthase. (454 aa)
	cbiG1	cobalt-precorrin-5A hydrolase. (324 aa)
	cbiF	Cobalt-precorrin-4 C11-methyltransferase. (295 aa)
	cbiL	cobalt-factor-II C20-methyltransferase; Belongs to the precorrin methyltransferase family. (234 aa)
	cbiT	cobalt-precorrin-6B C15-methyltransferase (decarboxylating). (185 aa)
	chlID	ATP-dependent cobaltochelatase subunit ChlID. (762 aa)
	cobN	ATP-dependent cobaltochelatase subunit CobN. (1310 aa)
	cbiC	Cobalt-precorrin-8 methylmutase. (259 aa)
	cbiE	Cobalt-precorrin-7 C5-methyltransferase. (260 aa)
	pduO	ATP:cob(I)alamin adenosyltransferase. (178 aa)
	cbiH2	cobalt-factor-III C17-methyltransferase. (355 aa)
	cbiH1	cobalt-factor-III C17-methyltransferase. (286 aa)
	cbiG2	Cobalt-precorrin 5A hydrolase. (322 aa)

Your Current Organism:

Haloquadratum walsbyi DSM 16790

NCBI taxonomy Id: 362976
Other names: H. walsbyi DSM 16790, Haloquadratum walsbyi str. DSM 16790, Haloquadratum walsbyi strain DSM 16790

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cbiA	cbiC	HQ_1829A	HQ_2297A	Cobyrinate a,c-diamide synthase.	Cobalt-precorrin-8 methylmutase.	0.997
cbiA	cbiE	HQ_1829A	HQ_2298A	Cobyrinate a,c-diamide synthase.	Cobalt-precorrin-7 C5-methyltransferase.	0.794
cbiA	cbiF	HQ_1829A	HQ_1832A	Cobyrinate a,c-diamide synthase.	Cobalt-precorrin-4 C11-methyltransferase.	0.966
cbiA	cbiG1	HQ_1829A	HQ_1831A	Cobyrinate a,c-diamide synthase.	cobalt-precorrin-5A hydrolase.	0.934
cbiA	cbiG2	HQ_1829A	HQ_3035A	Cobyrinate a,c-diamide synthase.	Cobalt-precorrin 5A hydrolase.	0.554
cbiA	cbiH1	HQ_1829A	HQ_3034A	Cobyrinate a,c-diamide synthase.	cobalt-factor-III C17-methyltransferase.	0.812
cbiA	cbiH2	HQ_1829A	HQ_3033A	Cobyrinate a,c-diamide synthase.	cobalt-factor-III C17-methyltransferase.	0.904
cbiA	cbiL	HQ_1829A	HQ_1833A	Cobyrinate a,c-diamide synthase.	cobalt-factor-II C20-methyltransferase; Belongs to the precorrin methyltransferase family.	0.978
cbiA	cbiP	HQ_1829A	HQ_1404A	Cobyrinate a,c-diamide synthase.	Adenosylcobyrate synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.	0.991
cbiA	cbiT	HQ_1829A	HQ_1834A	Cobyrinate a,c-diamide synthase.	cobalt-precorrin-6B C15-methyltransferase (decarboxylating).	0.955
cbiA	chlID	HQ_1829A	HQ_2295A	Cobyrinate a,c-diamide synthase.	ATP-dependent cobaltochelatase subunit ChlID.	0.580
cbiA	cobA	HQ_1829A	HQ_1405A	Cobyrinate a,c-diamide synthase.	cob(I)alamin adenosyltransferase.	0.983
cbiA	cobN	HQ_1829A	HQ_2296A	Cobyrinate a,c-diamide synthase.	ATP-dependent cobaltochelatase subunit CobN.	0.979
cbiA	pduO	HQ_1829A	HQ_2299A	Cobyrinate a,c-diamide synthase.	ATP:cob(I)alamin adenosyltransferase.	0.936
cbiC	cbiA	HQ_2297A	HQ_1829A	Cobalt-precorrin-8 methylmutase.	Cobyrinate a,c-diamide synthase.	0.997
cbiC	cbiE	HQ_2297A	HQ_2298A	Cobalt-precorrin-8 methylmutase.	Cobalt-precorrin-7 C5-methyltransferase.	0.999
cbiC	cbiF	HQ_2297A	HQ_1832A	Cobalt-precorrin-8 methylmutase.	Cobalt-precorrin-4 C11-methyltransferase.	0.993
cbiC	cbiG1	HQ_2297A	HQ_1831A	Cobalt-precorrin-8 methylmutase.	cobalt-precorrin-5A hydrolase.	0.916
cbiC	cbiG2	HQ_2297A	HQ_3035A	Cobalt-precorrin-8 methylmutase.	Cobalt-precorrin 5A hydrolase.	0.818
cbiC	cbiH1	HQ_2297A	HQ_3034A	Cobalt-precorrin-8 methylmutase.	cobalt-factor-III C17-methyltransferase.	0.927