(34 nodes) Proteasome network (Plasmodium falciparum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PF3D7_0518300	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (240 aa)
	PF3D7_0528000	Proteasome maturation factor UMP1, putative. (124 aa)
	PF3D7_1338100	26S proteasome regulatory subunit RPN3, putative. (503 aa)
	PF3D7_0608500	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (235 aa)
	PF3D7_0312300	26S proteasome regulatory subunit RPN12, putative. (304 aa)
	PF3D7_0317000	Proteasome subunit alpha type-3, putative. (252 aa)
	PF3D7_0205900	26S proteasome regulatory subunit RPN1, putative. (966 aa)
	PF3D7_0803800	Proteasome subunit beta; Belongs to the peptidase T1B family. (265 aa)
	PF3D7_0931800	Proteasome subunit beta type-6, putative. (282 aa)
	PF3D7_0413600	26S protease regulatory subunit 6B, putative; Belongs to the AAA ATPase family. (392 aa)
	PF3D7_0108000	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (218 aa)
	PF3D7_0912900	26S proteasome regulatory subunit RPN8, putative. (338 aa)
	PF3D7_0527200	Ubiquitin carboxyl-terminal hydrolase. (605 aa)
	PF3D7_1248900	26S protease regulatory subunit 8, putative; Belongs to the AAA ATPase family. (435 aa)
	PF3D7_1328100	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (270 aa)
	PF3D7_0807500	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (260 aa)
	PF3D7_0807800	26S proteasome regulatory subunit RPN10, putative. (481 aa)
	PF3D7_0727400	Proteasome subunit alpha type. (256 aa)
	PF3D7_1368100	26S proteasome regulatory subunit RPN11, putative. (311 aa)
	PF3D7_1353900	Proteasome subunit alpha type. (241 aa)
	PF3D7_1353800	Proteasome subunit alpha type. (246 aa)
	PF3D7_1311500	26S protease regulatory subunit 7, putative; Belongs to the AAA ATPase family. (420 aa)
	PF3D7_1306400	26S protease regulatory subunit 10B, putative; Belongs to the AAA ATPase family. (393 aa)
	PF3D7_1130400	26S protease regulatory subunit 6A, putative; Belongs to the AAA ATPase family. (439 aa)
	PF3D7_1129200	26S proteasome regulatory subunit RPN7, putative. (393 aa)
	PF3D7_1030500	26S proteasome regulatory subunit RPN9, putative. (393 aa)
	PF3D7_1017900	26S proteasome regulatory subunit p55, putative. (467 aa)
	PF3D7_1011400	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (271 aa)
	PF3D7_1008400	26S protease regulatory subunit 4, putative; Belongs to the AAA ATPase family. (448 aa)
	PF3D7_1474800	Proteasome endopeptidase complex; Belongs to the peptidase T1A family. (254 aa)
	PF3D7_1470900	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family. (195 aa)
	PF3D7_1466300	26S proteasome regulatory subunit RPN2, putative; Belongs to the proteasome subunit S1 family. (1172 aa)
	PF3D7_1414000	26S proteasome regulatory subunit RPN13, putative. (253 aa)
	PF3D7_1402300	26S proteasome regulatory subunit RPN6. (666 aa)

Your Current Organism:

Plasmodium falciparum

NCBI taxonomy Id: 36329
Other names: P. falciparum 3D7, Plasmodium falciparum (isolate 3D7), Plasmodium falciparum 3D7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PF3D7_0108000	PF3D7_0205900	Q8I261	O96153	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	26S proteasome regulatory subunit RPN1, putative.	0.990
PF3D7_0108000	PF3D7_0312300	Q8I261	O77345	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	26S proteasome regulatory subunit RPN12, putative.	0.997
PF3D7_0108000	PF3D7_0317000	Q8I261	O77396	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome subunit alpha type-3, putative.	0.999
PF3D7_0108000	PF3D7_0413600	Q8I261	Q8I1V1	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	26S protease regulatory subunit 6B, putative; Belongs to the AAA ATPase family.	0.997
PF3D7_0108000	PF3D7_0518300	Q8I261	A0A5K1K7U1	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.999
PF3D7_0108000	PF3D7_0527200	Q8I261	Q8I3J3	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Ubiquitin carboxyl-terminal hydrolase.	0.966
PF3D7_0108000	PF3D7_0528000	Q8I261	A0A5K1K941	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome maturation factor UMP1, putative.	0.993
PF3D7_0108000	PF3D7_0608500	Q8I261	C6KST3	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
PF3D7_0108000	PF3D7_0727400	Q8I261	Q8IBI3	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome subunit alpha type.	0.999
PF3D7_0108000	PF3D7_0803800	Q8I261	Q7K6A9	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome subunit beta; Belongs to the peptidase T1B family.	0.999
PF3D7_0108000	PF3D7_0807500	Q8I261	Q8IAR3	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.999
PF3D7_0108000	PF3D7_0807800	Q8I261	Q8IAR6	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	26S proteasome regulatory subunit RPN10, putative.	0.997
PF3D7_0108000	PF3D7_0912900	Q8I261	Q8I323	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	26S proteasome regulatory subunit RPN8, putative.	0.994
PF3D7_0108000	PF3D7_0931800	Q8I261	Q8I0U7	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome subunit beta type-6, putative.	0.999
PF3D7_0108000	PF3D7_1008400	Q8I261	Q8IJW0	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	26S protease regulatory subunit 4, putative; Belongs to the AAA ATPase family.	0.995
PF3D7_0108000	PF3D7_1011400	Q8I261	Q8IJT1	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	0.999
PF3D7_0108000	PF3D7_1017900	Q8I261	Q8IJM0	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	26S proteasome regulatory subunit p55, putative.	0.992
PF3D7_0108000	PF3D7_1030500	Q8I261	Q8IJA0	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	26S proteasome regulatory subunit RPN9, putative.	0.992
PF3D7_0108000	PF3D7_1129200	Q8I261	Q8II71	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	26S proteasome regulatory subunit RPN7, putative.	0.993
PF3D7_0108000	PF3D7_1130400	Q8I261	Q8II60	Proteasome subunit beta; The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH; Belongs to the peptidase T1B family.	26S protease regulatory subunit 6A, putative; Belongs to the AAA ATPase family.	0.994