14 items (Plasmodium falciparum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PF3D7_1218300	AP-2 complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family. (621 aa)
	PF3D7_1215800	Radial spoke head protein 9, putative. (366 aa)
	PF3D7_0613500	AP-3 complex subunit beta, putative. (1363 aa)
	PF3D7_0808100	AP-3 complex subunit delta, putative. (1609 aa)
	PF3D7_0217300	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (141 aa)
	PF3D7_0904100	AP-4 complex subunit epsilon, putative. (1388 aa)
	PF3D7_0617100	AP-2 complex subunit alpha, putative. (1236 aa)
	PF3D7_1440700	AP-3 complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family. (733 aa)
	PF3D7_1455500	AP-1 complex subunit gamma, putative. (1081 aa)
	PF3D7_1311400	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (437 aa)
	PF3D7_1119500	AP-4 complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family. (436 aa)
	PF3D7_0730200	AP complex subunit beta; Belongs to the adaptor complexes large subunit family. (858 aa)
	PF3D7_0528100	AP complex subunit beta. (929 aa)
	PF3D7_1246300	Clathrin adaptor domain-containing protein, putative. (888 aa)

Your Current Organism:

Plasmodium falciparum

NCBI taxonomy Id: 36329
Other names: P. falciparum 3D7, Plasmodium falciparum (isolate 3D7), Plasmodium falciparum 3D7

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PF3D7_0217300	PF3D7_0528100	O96254	Q8I3I6	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit beta.	0.978
PF3D7_0217300	PF3D7_0617100	O96254	C6KT12	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit alpha, putative.	0.956
PF3D7_0217300	PF3D7_0730200	O96254	Q8IBF8	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.950
PF3D7_0217300	PF3D7_0808100	O96254	C0H4T0	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-3 complex subunit delta, putative.	0.881
PF3D7_0217300	PF3D7_0904100	O96254	Q8I3A8	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-4 complex subunit epsilon, putative.	0.881
PF3D7_0217300	PF3D7_1119500	O96254	Q8IIH2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-4 complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.670
PF3D7_0217300	PF3D7_1218300	O96254	Q8I5M5	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.999
PF3D7_0217300	PF3D7_1246300	O96254	Q8I4W9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Clathrin adaptor domain-containing protein, putative.	0.956
PF3D7_0217300	PF3D7_1311400	O96254	Q8IEK4	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.670
PF3D7_0217300	PF3D7_1455500	O96254	Q8IKS3	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 complex subunit gamma, putative.	0.881
PF3D7_0528100	PF3D7_0217300	Q8I3I6	O96254	AP complex subunit beta.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.978
PF3D7_0528100	PF3D7_0613500	Q8I3I6	C6KSX7	AP complex subunit beta.	AP-3 complex subunit beta, putative.	0.485
PF3D7_0528100	PF3D7_0617100	Q8I3I6	C6KT12	AP complex subunit beta.	AP-2 complex subunit alpha, putative.	0.906
PF3D7_0528100	PF3D7_0730200	Q8I3I6	Q8IBF8	AP complex subunit beta.	AP complex subunit beta; Belongs to the adaptor complexes large subunit family.	0.441
PF3D7_0528100	PF3D7_0808100	Q8I3I6	C0H4T0	AP complex subunit beta.	AP-3 complex subunit delta, putative.	0.796
PF3D7_0528100	PF3D7_0904100	Q8I3I6	Q8I3A8	AP complex subunit beta.	AP-4 complex subunit epsilon, putative.	0.909
PF3D7_0528100	PF3D7_1119500	Q8I3I6	Q8IIH2	AP complex subunit beta.	AP-4 complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.812
PF3D7_0528100	PF3D7_1215800	Q8I3I6	Q8I5P9	AP complex subunit beta.	Radial spoke head protein 9, putative.	0.718
PF3D7_0528100	PF3D7_1218300	Q8I3I6	Q8I5M5	AP complex subunit beta.	AP-2 complex subunit mu, putative; Belongs to the adaptor complexes medium subunit family.	0.981
PF3D7_0528100	PF3D7_1246300	Q8I3I6	Q8I4W9	AP complex subunit beta.	Clathrin adaptor domain-containing protein, putative.	0.906