85 items (Gossypium hirsutum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107887821	BUD13 homolog. (592 aa)
	LOC107889597	Cell division cycle 5-like protein. (961 aa)
	LOC107893193	Cell division cycle 5-like protein. (958 aa)
	LOC107893513	Protein CWC15 homolog A-like isoform X1. (230 aa)
	LOC107893531	FHA domain-containing protein DDL-like isoform X1. (374 aa)
	LOC107893706	Zinc finger CCCH domain-containing protein 1-like. (342 aa)
	LOC107897382	BUD13 homolog. (591 aa)
	LOC107898558	pre-mRNA-splicing factor syf2-like. (308 aa)
	LOC107899967	SNW/SKI-interacting protein-like. (394 aa)
	LOC107901173	CWF19-like protein 2 homolog. (768 aa)
	LOC107903323	Coiled-coil domain-containing protein 94 homolog. (320 aa)
	LOC107903419	pre-mRNA-splicing factor CWC25 homolog. (411 aa)
	LOC107902058	pre-mRNA-splicing factor SPF27 homolog isoform X1. (254 aa)
	LOC107903333	Coiled-coil domain-containing protein 94 homolog. (289 aa)
	LOC107904473	Crooked neck-like protein 1. (705 aa)
	LOC107906614	Zinc finger CCCH domain-containing protein 25-like isoform X1. (359 aa)
	LOC107905184	Poly [ADP-ribose] polymerase. (482 aa)
	LOC107907372	pre-mRNA-processing factor 17-like isoform X1. (636 aa)
	LOC107907517	pre-mRNA-processing factor 17-like isoform X1. (573 aa)
	LOC107909088	Intron-binding protein aquarius-like isoform X1. (1540 aa)
	LOC107908649	Uncharacterized protein LOC107908649. (391 aa)
	LOC107910275	pre-mRNA-splicing factor CWC22 homolog. (874 aa)
	LOC107910592	Zinc finger CCCH domain-containing protein 1-like isoform X1. (342 aa)
	LOC107912450	Protein pleiotropic regulatory locus 1-like. (486 aa)
	LOC107914671	pre-mRNA-splicing factor 18-like. (418 aa)
	LOC107915359	pre-mRNA-splicing factor CWC22 homolog. (370 aa)
	LOC107913998	pre-mRNA-splicing factor SYF1-like. (913 aa)
	LOC107914928	pre-mRNA-splicing factor SLU7-like. (541 aa)
	LOC107915035	Peptidyl-prolyl cis-trans isomerase CYP57-like. (496 aa)
	LOC107918266	Protein CWC15 homolog A-like isoform X1. (230 aa)
	LOC107918298	Protein BUD31 homolog 2. (145 aa)
	LOC107920563	FHA domain-containing protein DDL-like isoform X1. (391 aa)
	LOC107922165	Zinc finger CCCH domain-containing protein 40-like. (503 aa)
	LOC107920904	pre-mRNA-splicing factor syf2-like. (307 aa)
	LOC107924019	pre-mRNA-splicing factor SYF1-like. (913 aa)
	LOC107924173	Crooked neck-like protein 1. (705 aa)
	LOC107923866	Serine/arginine repetitive matrix protein 2-like. (929 aa)
	LOC107925545	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
	LOC107926813	Cell division cycle 5-like protein. (961 aa)
	LOC107927203	Uncharacterized protein LOC107927203. (161 aa)
	LOC107927515	Coiled-coil domain-containing protein 94 homolog. (321 aa)
	LOC107926586	Uncharacterized protein LOC107926586. (343 aa)
	LOC107927965	Uncharacterized protein LOC107927965. (391 aa)
	LOC107927486	pre-mRNA-splicing factor CWC25 homolog. (412 aa)
	LOC107927588	Uncharacterized protein LOC107927588. (701 aa)
	LOC107928143	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
	LOC107928342	Intron-binding protein aquarius-like isoform X1. (1521 aa)
	LOC107929143	pre-mRNA-processing factor 19 homolog 1-like. (524 aa)
	LOC107930406	pre-mRNA-processing factor 19 homolog 1-like. (524 aa)
	LOC107932162	pre-mRNA-processing factor 19-like. (519 aa)
	LOC107933242	Protein pleiotropic regulatory locus 1-like. (484 aa)
	LOC107933374	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like. (455 aa)
	LOC107935650	Beta-catenin-like protein 1. (520 aa)
	LOC107936255	pre-mRNA-splicing factor SLU7. (543 aa)
	LOC107936504	pre-mRNA-splicing factor 18-like. (415 aa)
	LOC107935447	Peptidyl-prolyl cis-trans isomerase E-like. (172 aa)
	LOC107936145	pre-mRNA-processing factor 19 homolog 1-like. (523 aa)
	LOC107936763	Cell division cycle 5-like protein. (958 aa)
	LOC107940133	pre-mRNA-processing factor 19-like. (519 aa)
	LOC107943103	Uncharacterized protein LOC107943103. (705 aa)
	LOC107945064	Uncharacterized protein LOC107945064 isoform X1. (493 aa)
	LOC107943914	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like. (166 aa)
	LOC107945246	Beta-catenin-like protein 1. (520 aa)
	LOC107945461	Peptidyl-prolyl cis-trans isomerase CYP65-like. (596 aa)
	LOC107947367	Uncharacterized protein LOC107947367. (561 aa)
	LOC107946816	Uncharacterized protein LOC107946816. (561 aa)
	LOC107947183	pre-mRNA-splicing factor syf2-like. (307 aa)
	LOC107949762	pre-mRNA-splicing factor CLF1-like. (131 aa)
	LOC107949108	pre-mRNA-splicing factor syf2-like. (308 aa)
	LOC107951242	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1. (1016 aa)
	LOC107950582	pre-mRNA-splicing factor ISY1 homolog. (299 aa)
	LOC107951778	WD repeat-containing protein 25-like isoform X1. (451 aa)
	LOC107951791	pre-mRNA-splicing factor 18-like. (418 aa)
	LOC107954761	pre-mRNA-processing factor 17-like. (538 aa)
	LOC107955291	pre-mRNA-processing factor 17-like isoform X1. (583 aa)
	LOC107955360	Protein starmaker-like isoform X1. (925 aa)
	LOC107956862	pre-mRNA-splicing factor CWC21-like. (136 aa)
	LOC107957539	Poly [ADP-ribose] polymerase. (479 aa)
	LOC107959184	Zinc finger CCCH domain-containing protein 25-like. (375 aa)
	LOC107960470	pre-mRNA-splicing factor SLU7-like. (340 aa)
	LOC107962088	pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 isoform X1. (1232 aa)
	LOC107962288	pre-mRNA-splicing factor SPF27 homolog isoform X1. (254 aa)
	LOC107962732	SNW/SKI-interacting protein. (531 aa)
	LOC107962727	CWF19-like protein 2 homolog. (767 aa)
	LOC107962836	Peptidyl-prolyl cis-trans isomerase CYP57-like. (497 aa)

Your Current Organism:

Gossypium hirsutum

NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107887821	LOC107889597	A0A1U8HNB6	A0A1U8I1M2	BUD13 homolog.	Cell division cycle 5-like protein.	0.924
LOC107887821	LOC107893193	A0A1U8HNB6	A0A1U8I5X7	BUD13 homolog.	Cell division cycle 5-like protein.	0.924
LOC107887821	LOC107893513	A0A1U8HNB6	A0A1U8I709	BUD13 homolog.	Protein CWC15 homolog A-like isoform X1.	0.901
LOC107887821	LOC107893531	A0A1U8HNB6	A0A1U8I763	BUD13 homolog.	FHA domain-containing protein DDL-like isoform X1.	0.986
LOC107887821	LOC107893706	A0A1U8HNB6	A0A1U8IEL3	BUD13 homolog.	Zinc finger CCCH domain-containing protein 1-like.	0.939
LOC107887821	LOC107897382	A0A1U8HNB6	A0A1U8IJQ7	BUD13 homolog.	BUD13 homolog.	0.543
LOC107887821	LOC107898558	A0A1U8HNB6	A0A1U8IN43	BUD13 homolog.	pre-mRNA-splicing factor syf2-like.	0.767
LOC107887821	LOC107899967	A0A1U8HNB6	A0A1U8ISZ8	BUD13 homolog.	SNW/SKI-interacting protein-like.	0.934
LOC107887821	LOC107902058	A0A1U8HNB6	A0A1U8J6I2	BUD13 homolog.	pre-mRNA-splicing factor SPF27 homolog isoform X1.	0.708
LOC107887821	LOC107903323	A0A1U8HNB6	A0A1U8J3D8	BUD13 homolog.	Coiled-coil domain-containing protein 94 homolog.	0.668
LOC107887821	LOC107903333	A0A1U8HNB6	A0A1U8J894	BUD13 homolog.	Coiled-coil domain-containing protein 94 homolog.	0.668
LOC107887821	LOC107903419	A0A1U8HNB6	A0A1U8J3Q9	BUD13 homolog.	pre-mRNA-splicing factor CWC25 homolog.	0.836
LOC107887821	LOC107904473	A0A1U8HNB6	A0A1U8JDM9	BUD13 homolog.	Crooked neck-like protein 1.	0.934
LOC107887821	LOC107905184	A0A1U8HNB6	A0A1U8JG60	BUD13 homolog.	Poly [ADP-ribose] polymerase.	0.656
LOC107887821	LOC107906614	A0A1U8HNB6	A0A1U8JFP8	BUD13 homolog.	Zinc finger CCCH domain-containing protein 25-like isoform X1.	0.986
LOC107887821	LOC107907372	A0A1U8HNB6	A0A1U8JIW1	BUD13 homolog.	pre-mRNA-processing factor 17-like isoform X1.	0.903
LOC107887821	LOC107907517	A0A1U8HNB6	A0A1U8JJF6	BUD13 homolog.	pre-mRNA-processing factor 17-like isoform X1.	0.903
LOC107887821	LOC107908649	A0A1U8HNB6	A0A1U8JSX2	BUD13 homolog.	Uncharacterized protein LOC107908649.	0.767
LOC107887821	LOC107909088	A0A1U8HNB6	A0A1U8JNX8	BUD13 homolog.	Intron-binding protein aquarius-like isoform X1.	0.719
LOC107887821	LOC107910275	A0A1U8HNB6	A0A1U8JTF6	BUD13 homolog.	pre-mRNA-splicing factor CWC22 homolog.	0.949

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