STRINGSTRING
LOC107907325 LOC107907325 LOC107893821 LOC107893821 LOC107896138 LOC107896138 LOC107900663 LOC107900663 LOC107899516 LOC107899516 LOC107900659 LOC107900659 LOC107903459 LOC107903459 LOC107905342 LOC107905342 LOC107905856 LOC107905856 LOC107904473 LOC107904473 LOC107906651 LOC107906651 LOC107908741 LOC107908741 LOC107910074 LOC107910074 LOC107912393 LOC107912393 LOC107915697 LOC107915697 LOC107916781 LOC107916781 LOC107917811 LOC107917811 LOC107922585 LOC107922585 LOC107923951 LOC107923951 LOC107924120 LOC107924120 LOC107924173 LOC107924173 LOC107924596 LOC107924596 LOC107924608 LOC107924608 LOC107924034 LOC107924034 LOC107925908 LOC107925908 LOC107929017 LOC107929017 LOC107929415 LOC107929415 LOC107929420 LOC107929420 LOC107929397 LOC107929397 LOC107933485 LOC107933485 LOC107932757 LOC107932757 LOC107937811 LOC107937811 LOC107937659 LOC107937659 LOC107939587 LOC107939587 LOC107949509 LOC107949509 LOC107948531 LOC107948531 LOC107949762 LOC107949762 LOC107949854 LOC107949854 LOC107951006 LOC107951006 LOC107950582 LOC107950582 LOC107952120 LOC107952120 LOC107952728 LOC107952728 LOC107953202 LOC107953202 LOC107953522 LOC107953522 LOC107955414 LOC107955414 LOC107954791 LOC107954791 LOC107955123 LOC107955123 LOC107957520 LOC107957520 LOC107959389 LOC107959389 LOC107960167 LOC107960167 LOC107961935 LOC107961935 LOC107963714 LOC107963714
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107907325Splicing factor 3A subunit 2-like. (342 aa)
LOC107893821pre-mRNA-processing factor 39-like isoform X1. (158 aa)
LOC107896138SRSF protein kinase 1-like. (422 aa)
LOC107900663Bifunctional pinoresinol-lariciresinol reductase 2. (313 aa)
LOC107899516SRSF protein kinase 1-like isoform X1. (632 aa)
LOC107900659Isoflavone reductase homolog. (312 aa)
LOC107903459Splicing factor, suppressor of white-apricot homolog isoform X1. (877 aa)
LOC107905342SRSF protein kinase 2. (625 aa)
LOC107905856Nuclear factor of activated T-cells 5-like isoform X1. (1144 aa)
LOC107904473Crooked neck-like protein 1. (705 aa)
LOC107906651Serine/threonine-protein kinase SRPK-like isoform X1. (542 aa)
LOC107908741Splicing factor 3A subunit 2-like. (342 aa)
LOC107910074U4/U6.U5 tri-snRNP-associated protein 2-like isoform X1. (567 aa)
LOC107912393U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (205 aa)
LOC107915697SRSF protein kinase 1-like. (422 aa)
LOC107916781Thioredoxin-like protein 4B. (151 aa)
LOC107917811Uncharacterized protein LOC107917811 isoform X1. (126 aa)
LOC107922585Uncharacterized protein LOC107922585. (126 aa)
LOC107923951Protein RIK-like isoform X1. (624 aa)
LOC107924120pre-mRNA-processing factor 39-like isoform X1. (812 aa)
LOC107924173Crooked neck-like protein 1. (705 aa)
LOC107924596U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (208 aa)
LOC107924608Luc7-like protein 3 isoform X1. (350 aa)
LOC107924034pre-mRNA-processing factor 39-like isoform X1. (812 aa)
LOC107925908pre-mRNA-processing factor 39-like isoform X1. (811 aa)
LOC107929017Splicing factor 3B subunit 1-like. (1269 aa)
LOC107929415Isoflavone reductase homolog. (312 aa)
LOC107929420Bifunctional pinoresinol-lariciresinol reductase 2-like. (313 aa)
LOC107929397Splicing factor 3B subunit 1-like. (1269 aa)
LOC107933485Luc7-like protein 3 isoform X1. (350 aa)
LOC107932757Protein suppressor of white apricot-like isoform X1. (873 aa)
LOC107937811SRSF protein kinase 1-like; Belongs to the protein kinase superfamily. (433 aa)
LOC107937659pre-mRNA-processing factor 39-like isoform X1. (811 aa)
LOC107939587SRSF protein kinase 1-like; Belongs to the protein kinase superfamily. (431 aa)
LOC107949509Putative RNA-binding protein Luc7-like 2. (413 aa)
LOC107948531SRSF protein kinase 1-like. (545 aa)
LOC107949762pre-mRNA-splicing factor CLF1-like. (131 aa)
LOC107949854U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
LOC107951006Nuclear factor of activated T-cells 5-like isoform X1. (1073 aa)
LOC107950582pre-mRNA-splicing factor ISY1 homolog. (299 aa)
LOC107952120Putative RNA-binding protein Luc7-like 1. (407 aa)
LOC107952728pre-mRNA-processing factor 39-like isoform X1. (812 aa)
LOC107953202U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (191 aa)
LOC107953522Uncharacterized protein LOC107953522 isoform X1. (127 aa)
LOC107955414pre-mRNA-processing factor 39-like isoform X1. (813 aa)
LOC107954791Uncharacterized protein LOC107954791 isoform X1. (127 aa)
LOC107955123Luc7-like protein 3 isoform X1. (351 aa)
LOC107957520SRSF protein kinase 2-like isoform X1. (546 aa)
LOC107959389Serine/threonine-protein kinase SRPK-like. (545 aa)
LOC107960167U4/U6.U5 tri-snRNP-associated protein 2-like. (549 aa)
LOC107961935U4/U6.U5 tri-snRNP-associated protein 2-like isoform X1. (567 aa)
LOC107963714U4/U6.U5 tri-snRNP-associated protein 2-like isoform X1. (551 aa)
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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