STRINGSTRING
LOC107893333 LOC107893333 LOC107923870 LOC107923870 LOC107924901 LOC107924901 LOC107924310 LOC107924310 LOC107925706 LOC107925706 LOC107925358 LOC107925358 LOC107925704 LOC107925704 LOC107927193 LOC107927193 LOC107927293 LOC107927293 LOC107928479 LOC107928479 LOC107928529 LOC107928529 LOC107928995 LOC107928995 LOC107928250 LOC107928250 LOC107929171 LOC107929171 LOC107932092 LOC107932092 LOC107931153 LOC107931153 LOC107932501 LOC107932501 LOC107932514 LOC107932514 LOC107933796 LOC107933796 LOC107932921 LOC107932921 LOC107933321 LOC107933321 LOC107933515 LOC107933515 LOC107934476 LOC107934476 LOC107933795 LOC107933795 LOC107935343 LOC107935343 LOC107934430 LOC107934430 LOC107935233 LOC107935233 LOC107936805 LOC107936805 LOC107936804 LOC107936804 LOC107935920 LOC107935920 LOC107937909 LOC107937909 LOC107938030 LOC107938030 LOC107939147 LOC107939147 LOC107939100 LOC107939100 LOC107939126 LOC107939126 LOC107940679 LOC107940679 LOC107941451 LOC107941451 LOC107942638 LOC107942638 LOC107941609 LOC107941609 LOC107941655 LOC107941655 LOC107942737 LOC107942737 LOC107942736 LOC107942736 LOC107943472 LOC107943472 LOC107943566 LOC107943566 LOC107945952 LOC107945952 LOC107946806 LOC107946806 LOC107948371 LOC107948371 LOC107947368 LOC107947368 LOC107949785 LOC107949785 LOC107949787 LOC107949787 LOC107951102 LOC107951102 LOC107950618 LOC107950618 LOC107951925 LOC107951925 LOC107953099 LOC107953099 LOC107953481 LOC107953481 LOC107953645 LOC107953645 LOC107953838 LOC107953838 LOC107953597 LOC107953597 LOC107953837 LOC107953837 LOC107955470 LOC107955470 LOC107955581 LOC107955581 LOC107955757 LOC107955757 LOC107955994 LOC107955994 LOC107955117 LOC107955117 LOC107956835 LOC107956835 LOC107956624 LOC107956624 LOC107959080 LOC107959080 LOC107958509 LOC107958509 LOC107958580 LOC107958580 LOC107959147 LOC107959147 LOC107960178 LOC107960178 LOC107960741 LOC107960741 LOC107961644 LOC107961644 LOC107962295 LOC107962295 LOC107887792 LOC107887792 LOC107886412 LOC107886412 LOC107888376 LOC107888376 LOC107887097 LOC107887097 LOC107889799 LOC107889799 LOC107888743 LOC107888743 LOC107891805 LOC107891805 LOC107892000 LOC107892000 LOC107892078 LOC107892078 LOC107893275 LOC107893275 LOC107894047 LOC107894047 LOC107893353 LOC107893353 LOC107895547 LOC107895547 LOC107893482 LOC107893482 LOC107893893 LOC107893893 LOC107894079 LOC107894079 LOC107895222 LOC107895222 LOC107897934 LOC107897934 LOC107898193 LOC107898193 LOC107898675 LOC107898675 LOC107899067 LOC107899067 LOC107899466 LOC107899466 LOC107899563 LOC107899563 LOC107897727 LOC107897727 LOC107900515 LOC107900515 LOC107900993 LOC107900993 LOC107901104 LOC107901104 LOC107903316 LOC107903316 LOC107901771 LOC107901771 LOC107902799 LOC107902799 LOC107902878 LOC107902878 LOC107904403 LOC107904403 LOC107903386 LOC107903386 LOC107904797 LOC107904797 LOC107905873 LOC107905873 LOC107906338 LOC107906338 LOC107906337 LOC107906337 LOC107907069 LOC107907069 LOC107907274 LOC107907274 LOC107907339 LOC107907339 LOC107906167 LOC107906167 LOC107905983 LOC107905983 LOC107909129 LOC107909129 LOC107908833 LOC107908833 LOC107908838 LOC107908838 LOC107912113 LOC107912113 LOC107910636 LOC107910636 LOC107886941 LOC107886941 LOC107912696 LOC107912696 LOC107912858 LOC107912858 LOC107913171 LOC107913171 LOC107913234 LOC107913234 LOC107913539 LOC107913539 LOC107914737 LOC107914737 LOC107913440 LOC107913440 LOC107913892 LOC107913892 LOC107913776 LOC107913776 LOC107916929 LOC107916929 LOC107916885 LOC107916885 LOC107920194 LOC107920194 LOC107920217 LOC107920217 LOC107920789 LOC107920789 LOC107919892 LOC107919892 LOC107921247 LOC107921247 LOC107921408 LOC107921408 LOC107923752 LOC107923752 LOC107887093 LOC107887093 LOC107887178 LOC107887178
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107893333DNA repair protein recA homolog 3, mitochondrial-like; Belongs to the RecA family. (341 aa)
LOC107923870Protein BPS1, chloroplastic-like. (347 aa)
LOC107924901tyrosyl-DNA phosphodiesterase 1-like. (645 aa)
LOC107924310DNA repair protein recA homolog 3, mitochondrial-like. (176 aa)
LOC107925706DNA repair protein recA homolog 2, mitochondrial; Belongs to the RecA family. (391 aa)
LOC107925358Uncharacterized protein LOC107925358. (239 aa)
LOC107925704Cell division control protein 45 homolog. (595 aa)
LOC107927193CST complex subunit TEN1-like. (125 aa)
LOC107927293Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (968 aa)
LOC107928479Meiotic recombination protein DMC1 homolog; Belongs to the RecA family. (353 aa)
LOC107928529DNA-directed RNA polymerase V subunit 7-like. (183 aa)
LOC107928995DNA-directed RNA polymerase V subunit 7-like. (183 aa)
LOC107928250Single-stranded DNA-bindig protein WHY2, mitochondrial-like. (229 aa)
LOC107929171Meiotic recombination protein DMC1 homolog; Belongs to the RecA family. (344 aa)
LOC107932092DNA repair protein recA homolog 3, mitochondrial-like; Belongs to the RecA family. (419 aa)
LOC107931153Nodulin homeobox-like. (924 aa)
LOC107932501DNA-directed RNA polymerase II subunit RPB7-like. (176 aa)
LOC107932514DNA repair protein recA homolog 3, mitochondrial-like. (181 aa)
LOC107933796Lon protease homolog 1, mitochondrial-like; Belongs to the peptidase S16 family. (444 aa)
LOC107932921DNA repair protein RAD51 homolog 2-like. (371 aa)
LOC107933321Protein OSB3, chloroplastic/mitochondrial-like. (330 aa)
LOC107933515Structural maintenance of chromosomes protein 6B-like. (1112 aa)
LOC107934476DNA repair protein RAD50-like isoform X1. (1317 aa)
LOC107933795Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (960 aa)
LOC107935343tyrosyl-DNA phosphodiesterase 1-like. (645 aa)
LOC107934430Glycine-rich RNA-binding protein 2, mitochondrial-like. (143 aa)
LOC107935233DNA repair protein recA homolog 2, mitochondrial-like. (90 aa)
LOC107936805DNA repair protein RAD4. (953 aa)
LOC107936804CST complex subunit STN1. (159 aa)
LOC107935920DNA helicase; Belongs to the MCM family. (758 aa)
LOC107937909Replication protein A 32 kDa subunit A-like. (286 aa)
LOC107938030Uncharacterized protein LOC107938030. (1132 aa)
LOC107939147DNA repair protein RAD50-like isoform X1. (1317 aa)
LOC107939100Protection of telomeres protein 1b-like. (451 aa)
LOC107939126Glycine-rich RNA-binding protein 2, mitochondrial-like. (143 aa)
LOC107940679Protein OSB1, mitochondrial. (278 aa)
LOC107941451Glycine-rich RNA-binding protein 2, mitochondrial-like. (276 aa)
LOC107942638DNA helicase; Belongs to the MCM family. (790 aa)
LOC107941609Meiotic recombination protein DMC1 homolog; Belongs to the RecA family. (381 aa)
LOC107941655Protein OSB2, chloroplastic-like. (296 aa)
LOC107942737DNA repair protein XRCC3 homolog. (295 aa)
LOC107942736Replication protein A 32 kDa subunit B-like isoform X1. (283 aa)
LOC107943472Single-stranded DNA-binding protein-like. (142 aa)
LOC107943566Glycine-rich RNA-binding protein 2, mitochondrial-like. (277 aa)
LOC107945952Protein BPS1, chloroplastic-like. (352 aa)
LOC107946806Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (858 aa)
LOC107948371Translin-like. (295 aa)
LOC107947368Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (861 aa)
LOC107949785Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (626 aa)
LOC107949787Glycine-rich RNA-binding protein 4, mitochondrial-like. (264 aa)
LOC107951102Uncharacterized protein LOC107951102. (174 aa)
LOC107950618Nuclear pore complex protein NUP35. (331 aa)
LOC107951925Nuclear pore complex protein NUP35. (330 aa)
LOC107953099DNA-directed RNA polymerase II subunit RPB7. (176 aa)
LOC107953481Glycine-rich RNA-binding protein 2, mitochondrial-like. (273 aa)
LOC107953645Single-stranded DNA-binding protein-like. (223 aa)
LOC107953838Protein EMBRYONIC FLOWER 1-like isoform X1. (1283 aa)
LOC107953597Uncharacterized protein LOC107953597. (1134 aa)
LOC107953837Protein EMBRYONIC FLOWER 1-like. (1255 aa)
LOC107955470Protein OSB2, chloroplastic-like. (295 aa)
LOC107955581DNA repair protein UVH3-like isoform X1. (1710 aa)
LOC107955757Putative peptidase YMR114C. (393 aa)
LOC107955994Protection of telomeres protein 1b-like. (482 aa)
LOC107955117Structural maintenance of chromosomes protein 6B-like isoform X1. (1058 aa)
LOC107956835Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein-like. (126 aa)
LOC107956624DNA repair protein RAD51 homolog 2-like. (371 aa)
LOC107959080DNA repair protein RAD51 homolog 4 isoform X1. (317 aa)
LOC107958509Twinkle homolog protein, chloroplastic/mitochondrial-like isoform X1. (704 aa)
LOC107958580DNA repair protein UVH3-like isoform X1. (1701 aa)
LOC107959147DNA-directed RNA polymerase II subunit RPB7-like isoform X1. (146 aa)
LOC107960178Uncharacterized protein LOC107960178. (446 aa)
LOC107960741Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12. (510 aa)
LOC107961644DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily. (343 aa)
LOC107962295SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1. (688 aa)
LOC107887792Protein OSB1, mitochondrial-like. (205 aa)
LOC107886412LOW QUALITY PROTEIN: DNA repair endonuclease UVH1-like. (970 aa)
LOC107888376Replication protein A 32 kDa subunit A-like isoform X1. (282 aa)
LOC107887097Glycine-rich RNA-binding protein 4, mitochondrial-like. (264 aa)
LOC107889799DNA excision repair protein ERCC-1-like. (423 aa)
LOC107888743RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (517 aa)
LOC107891805Lon protease homolog, mitochondrial-like. (137 aa)
LOC107892000Protein gamma response 1-like isoform X1. (648 aa)
LOC107892078RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (517 aa)
LOC107893275DNA excision repair protein ERCC-1-like. (400 aa)
LOC107894047Single-stranded DNA-binding protein, mitochondrial-like isoform X1. (214 aa)
LOC107893353LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like. (550 aa)
LOC107895547ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (733 aa)
LOC107893482Replication protein A 32 kDa subunit A-like isoform X1. (281 aa)
LOC107893893Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (974 aa)
LOC107894079Single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1. (270 aa)
LOC107895222DNA polymerase IV-like isoform X1. (113 aa)
LOC107897934DNA polymerase. (1531 aa)
LOC107898193Protection of telomeres protein 1b-like. (463 aa)
LOC107898675Protein OSB3, chloroplastic/mitochondrial-like. (330 aa)
LOC107899067Single-stranded DNA-binding protein, mitochondrial isoform X1. (214 aa)
LOC107899466Translin-like. (295 aa)
LOC107899563Transcription factor bHLH140 isoform X1. (700 aa)
LOC107897727DNA repair protein recA homolog 3, mitochondrial-like; Belongs to the RecA family. (419 aa)
LOC107900515Protein EMBRYONIC FLOWER 1-like isoform X1. (1283 aa)
LOC107900993DNA repair protein RAD51 homolog. (204 aa)
LOC107901104DNA repair protein recA homolog 3, mitochondrial-like; Belongs to the RecA family. (419 aa)
LOC107903316DNA repair protein XRCC3 homolog. (295 aa)
LOC107901771SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1. (714 aa)
LOC107902799Replication protein A 32 kDa subunit A-like. (344 aa)
LOC107902878Replication protein A 32 kDa subunit B-like. (263 aa)
LOC107904403DNA-directed RNA polymerase V subunit 7-like isoform X1. (193 aa)
LOC107903386Nodulin homeobox-like. (924 aa)
LOC107904797DNA-directed RNA polymerase V subunit 7-like. (176 aa)
LOC107905873DNA helicase; Belongs to the MCM family. (758 aa)
LOC107906338Primase homolog protein isoform X1. (469 aa)
LOC107906337Twinkle homolog protein, chloroplastic/mitochondrial. (704 aa)
LOC107907069DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily. (344 aa)
LOC107907274CST complex subunit CTC1-like isoform X1. (1271 aa)
LOC107907339CST complex subunit CTC1-like isoform X1. (1271 aa)
LOC107906167DNA repair protein RAD51 homolog 4-like isoform X1. (327 aa)
LOC107905983Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12-like. (458 aa)
LOC107909129Single-stranded DNA-bindig protein WHY2, mitochondrial-like. (229 aa)
LOC107908833Telomere repeat-binding factor 1-like. (288 aa)
LOC107908838DNA polymerase kappa isoform X1. (689 aa)
LOC107912113Glycine-rich RNA-binding protein 2, mitochondrial-like. (278 aa)
LOC107910636Uncharacterized protein LOC107910636. (175 aa)
LOC107886941DNA polymerase kappa-like isoform X1. (662 aa)
LOC107912696Protein gamma response 1-like. (643 aa)
LOC107912858ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (733 aa)
LOC107913171Single-stranded DNA-binding protein-like. (223 aa)
LOC107913234DNA polymerase. (1531 aa)
LOC107913539DNA helicase; Belongs to the MCM family. (839 aa)
LOC107914737Glycine-rich RNA-binding protein 2, mitochondrial-like. (139 aa)
LOC107913440Protection of telomeres protein 1b-like isoform X1. (451 aa)
LOC107913892Nuclear pore complex protein NUP35. (311 aa)
LOC107913776DNA helicase; Belongs to the MCM family. (758 aa)
LOC107916929Protein gamma response 1-like. (643 aa)
LOC107916885Protein MCM10 homolog isoform X1. (401 aa)
LOC107920194Structural maintenance of chromosomes protein 5 isoform X1. (1051 aa)
LOC107920217Single-stranded DNA-binding protein WHY1, chloroplastic-like isoform X1. (270 aa)
LOC107920789DNA helicase; Belongs to the MCM family. (839 aa)
LOC107919892DNA repair endonuclease UVH1-like isoform X1. (967 aa)
LOC107921247Protein MCM10 homolog. (401 aa)
LOC107921408Uncharacterized protein LOC107921408. (239 aa)
LOC107923752Protein BPS1, chloroplastic-like. (352 aa)
LOC107887093Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (626 aa)
LOC107887178CST complex subunit TEN1-like. (125 aa)
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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