STRINGSTRING
LOC107922165 LOC107922165 LOC107924596 LOC107924596 LOC107933114 LOC107933114 LOC107936255 LOC107936255 LOC107936496 LOC107936496 LOC107940226 LOC107940226 LOC107943960 LOC107943960 LOC107946298 LOC107946298 LOC107945661 LOC107945661 LOC107946119 LOC107946119 LOC107949854 LOC107949854 LOC107951005 LOC107951005 LOC107951030 LOC107951030 LOC107953202 LOC107953202 LOC107957409 LOC107957409 LOC107959683 LOC107959683 LOC107959727 LOC107959727 LOC107960470 LOC107960470 LOC107962732 LOC107962732 LOC107961890 LOC107961890 LOC107889002 LOC107889002 LOC107891645 LOC107891645 LOC107891738 LOC107891738 LOC107891788 LOC107891788 LOC107892375 LOC107892375 LOC107893935 LOC107893935 LOC107897685 LOC107897685 LOC107897761 LOC107897761 LOC107897276 LOC107897276 LOC107897745 LOC107897745 LOC107899967 LOC107899967 LOC107904217 LOC107904217 LOC107904274 LOC107904274 LOC107905860 LOC107905860 LOC107906455 LOC107906455 LOC107910661 LOC107910661 LOC107912780 LOC107912780 LOC107912393 LOC107912393 LOC107914889 LOC107914889 LOC107914941 LOC107914941 LOC107915220 LOC107915220 LOC107914928 LOC107914928 LOC107917951 LOC107917951 LOC107917970 LOC107917970 LOC107918111 LOC107918111 LOC107920000 LOC107920000
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107922165Zinc finger CCCH domain-containing protein 40-like. (503 aa)
LOC107924596U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (208 aa)
LOC107933114Stem-specific protein TSJT1-like. (251 aa)
LOC107936255pre-mRNA-splicing factor SLU7. (543 aa)
LOC107936496Splicing factor U2af small subunit B-like. (281 aa)
LOC107940226Splicing factor U2af small subunit B-like. (281 aa)
LOC107943960pre-mRNA-processing-splicing factor 8-like. (230 aa)
LOC107946298Putative pentatricopeptide repeat-containing protein At2g02150 isoform X1. (777 aa)
LOC107945661U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (583 aa)
LOC107946119Glucan endo-1,3-beta-glucosidase 3-like. (326 aa)
LOC107949854U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (199 aa)
LOC107951005PLASMODESMATA CALLOSE-BINDING PROTEIN 1-like. (278 aa)
LOC107951030Splicing factor U2af small subunit B-like. (282 aa)
LOC107953202U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (191 aa)
LOC107957409U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (572 aa)
LOC107959683PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like. (242 aa)
LOC107959727PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like. (236 aa)
LOC107960470pre-mRNA-splicing factor SLU7-like. (340 aa)
LOC107962732SNW/SKI-interacting protein. (531 aa)
LOC107961890U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like. (479 aa)
LOC107889002Stem-specific protein TSJT1-like. (264 aa)
LOC107891645Splicing factor U2af small subunit B-like. (314 aa)
LOC107891738Integumentary mucin C.1-like. (318 aa)
LOC107891788Stem-specific protein TSJT1-like. (264 aa)
LOC107892375U11/U12 small nuclear ribonucleoprotein 65 kDa protein-like isoform X1. (521 aa)
LOC107893935Zinc finger CCCH domain-containing protein 5-like isoform X2. (610 aa)
LOC107897685Stem-specific protein TSJT1-like. (251 aa)
LOC107897761Stem-specific protein TSJT1-like. (251 aa)
LOC107897276pre-mRNA-processing-splicing factor 8-like. (2353 aa)
LOC107897745Uncharacterized protein LOC107897745 isoform X1. (1026 aa)
LOC107899967SNW/SKI-interacting protein-like. (394 aa)
LOC107904217U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (574 aa)
LOC107904274U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (571 aa)
LOC107905860PLASMODESMATA CALLOSE-BINDING PROTEIN 1-like. (278 aa)
LOC107906455pre-mRNA-processing-splicing factor 8-like. (2354 aa)
LOC107910661Zinc finger CCCH domain-containing protein 5-like. (734 aa)
LOC107912780Splicing factor U2af small subunit B-like. (314 aa)
LOC107912393U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (205 aa)
LOC107914889Stem-specific protein TSJT1-like. (251 aa)
LOC107914941Uncharacterized protein LOC107914941. (1030 aa)
LOC107915220Splicing factor U2af small subunit B-like. (280 aa)
LOC107914928pre-mRNA-splicing factor SLU7-like. (541 aa)
LOC107917951Stem-specific protein TSJT1-like. (255 aa)
LOC107917970Stem-specific protein TSJT1-like. (255 aa)
LOC107918111Putative pentatricopeptide repeat-containing protein At2g02150 isoform X1. (777 aa)
LOC107920000Zinc finger CCCH domain-containing protein 5-like isoform X1. (724 aa)
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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