STRINGSTRING
LOC107949107 LOC107949107 LOC107886170 LOC107886170 LOC107886348 LOC107886348 LOC107886763 LOC107886763 LOC107887088 LOC107887088 LOC107889174 LOC107889174 LOC107891521 LOC107891521 LOC107893182 LOC107893182 LOC107893199 LOC107893199 LOC107893513 LOC107893513 LOC107894577 LOC107894577 LOC107894647 LOC107894647 LOC107896350 LOC107896350 LOC107896773 LOC107896773 LOC107898558 LOC107898558 LOC107897276 LOC107897276 LOC107900866 LOC107900866 LOC107899248 LOC107899248 LOC107901670 LOC107901670 LOC107900113 LOC107900113 LOC107903793 LOC107903793 LOC107902058 LOC107902058 LOC107902677 LOC107902677 LOC107903911 LOC107903911 LOC107905672 LOC107905672 LOC107905728 LOC107905728 LOC107904473 LOC107904473 LOC107906342 LOC107906342 LOC107906455 LOC107906455 LOC107905896 LOC107905896 LOC107907325 LOC107907325 LOC107907372 LOC107907372 LOC107907517 LOC107907517 LOC107908690 LOC107908690 LOC107908741 LOC107908741 LOC107909088 LOC107909088 LOC107909985 LOC107909985 LOC107908649 LOC107908649 LOC107910275 LOC107910275 LOC107909304 LOC107909304 LOC107910675 LOC107910675 LOC107910684 LOC107910684 LOC107910065 LOC107910065 LOC107912426 LOC107912426 LOC107912450 LOC107912450 LOC107913510 LOC107913510 LOC107912482 LOC107912482 LOC107912607 LOC107912607 LOC107914111 LOC107914111 LOC107914725 LOC107914725 LOC107915359 LOC107915359 LOC107913998 LOC107913998 LOC107915035 LOC107915035 LOC107916863 LOC107916863 LOC107916733 LOC107916733 LOC107918266 LOC107918266 LOC107918638 LOC107918638 LOC107917472 LOC107917472 LOC107920423 LOC107920423 LOC107922165 LOC107922165 LOC107920904 LOC107920904 LOC107922261 LOC107922261 LOC107923020 LOC107923020 LOC107923072 LOC107923072 LOC107924019 LOC107924019 LOC107924173 LOC107924173 LOC107924431 LOC107924431 LOC107924880 LOC107924880 LOC107925138 LOC107925138 LOC107925053 LOC107925053 LOC107925545 LOC107925545 LOC107927965 LOC107927965 LOC107928220 LOC107928220 LOC107927452 LOC107927452 LOC107929017 LOC107929017 LOC107928143 LOC107928143 LOC107928342 LOC107928342 LOC107928882 LOC107928882 LOC107928887 LOC107928887 LOC107930300 LOC107930300 LOC107929397 LOC107929397 LOC107930376 LOC107930376 LOC107930383 LOC107930383 LOC107932177 LOC107932177 LOC107933242 LOC107933242 LOC107934364 LOC107934364 LOC107934847 LOC107934847 LOC107936651 LOC107936651 LOC107936855 LOC107936855 LOC107936980 LOC107936980 LOC107937597 LOC107937597 LOC107936887 LOC107936887 LOC107938433 LOC107938433 LOC107939223 LOC107939223 LOC107939473 LOC107939473 LOC107941271 LOC107941271 LOC107942735 LOC107942735 LOC107943936 LOC107943936 LOC107943960 LOC107943960 LOC107944260 LOC107944260 LOC107945064 LOC107945064 LOC107945461 LOC107945461 LOC107946308 LOC107946308 LOC107946114 LOC107946114 LOC107947377 LOC107947377 LOC107947183 LOC107947183 LOC107948395 LOC107948395 LOC107948421 LOC107948421 LOC107949762 LOC107949762 LOC107949108 LOC107949108 LOC107949227 LOC107949227 LOC107949630 LOC107949630 LOC107949781 LOC107949781 LOC107950784 LOC107950784 LOC107950582 LOC107950582 LOC107953282 LOC107953282 LOC107953587 LOC107953587 LOC107954761 LOC107954761 LOC107955291 LOC107955291 LOC107955905 LOC107955905 LOC107957208 LOC107957208 LOC107958014 LOC107958014 LOC107958508 LOC107958508 LOC107961947 LOC107961947 LOC107962288 LOC107962288 LOC107961710 LOC107961710 LOC107962870 LOC107962870 LOC107962836 LOC107962836 LOC107962985 LOC107962985
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107949107Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC107886170Protein STABILIZED1-like. (1033 aa)
LOC107886348Uncharacterized protein LOC107886348 isoform X1. (163 aa)
LOC107886763Protein STABILIZED1-like isoform X1. (1033 aa)
LOC107887088Serine/arginine repetitive matrix protein 2-like isoform X1. (1567 aa)
LOC107889174116 kDa U5 small nuclear ribonucleoprotein component-like. (990 aa)
LOC107891521116 kDa U5 small nuclear ribonucleoprotein component-like. (990 aa)
LOC107893182Uncharacterized protein LOC107893182 isoform X1. (587 aa)
LOC107893199Uncharacterized protein LOC107893199. (130 aa)
LOC107893513Protein CWC15 homolog A-like isoform X1. (230 aa)
LOC107894577Uncharacterized protein LOC107894577. (348 aa)
LOC107894647DEAD-box ATP-dependent RNA helicase 2-like. (310 aa)
LOC107896350Small nuclear ribonucleoprotein G. (80 aa)
LOC107896773U5 small nuclear ribonucleoprotein 40 kDa protein. (342 aa)
LOC107898558pre-mRNA-splicing factor syf2-like. (308 aa)
LOC107897276pre-mRNA-processing-splicing factor 8-like. (2353 aa)
LOC107900866Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)
LOC107899248Small nuclear ribonucleoprotein G. (80 aa)
LOC107901670Splicing factor 3B subunit 2-like. (600 aa)
LOC107900113Eukaryotic initiation factor 4A-3-like. (430 aa)
LOC107903793DEAD-box ATP-dependent RNA helicase 21-like; Belongs to the DEAD box helicase family. (671 aa)
LOC107902058pre-mRNA-splicing factor SPF27 homolog isoform X1. (254 aa)
LOC107902677Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (142 aa)
LOC107903911Small nuclear ribonucleoprotein Sm D2. (107 aa)
LOC107905672Uncharacterized membrane protein At1g16860-like. (438 aa)
LOC107905728Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (107 aa)
LOC107904473Crooked neck-like protein 1. (705 aa)
LOC107906342Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5. (1189 aa)
LOC107906455pre-mRNA-processing-splicing factor 8-like. (2354 aa)
LOC107905896Uncharacterized membrane protein At1g16860-like. (437 aa)
LOC107907325Splicing factor 3A subunit 2-like. (342 aa)
LOC107907372pre-mRNA-processing factor 17-like isoform X1. (636 aa)
LOC107907517pre-mRNA-processing factor 17-like isoform X1. (573 aa)
LOC107908690Small nuclear ribonucleoprotein G. (80 aa)
LOC107908741Splicing factor 3A subunit 2-like. (342 aa)
LOC107909088Intron-binding protein aquarius-like isoform X1. (1540 aa)
LOC107909985Probable splicing factor 3A subunit 1. (583 aa)
LOC107908649Uncharacterized protein LOC107908649. (391 aa)
LOC107910275pre-mRNA-splicing factor CWC22 homolog. (874 aa)
LOC107909304Protein STABILIZED1-like. (1033 aa)
LOC107910675Probable splicing factor 3A subunit 1. (817 aa)
LOC107910684Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
LOC107910065Uncharacterized membrane protein At1g16860-like. (437 aa)
LOC107912426Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC107912450Protein pleiotropic regulatory locus 1-like. (486 aa)
LOC107913510Small nuclear ribonucleoprotein Sm D2. (107 aa)
LOC107912482Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC107912607LOW QUALITY PROTEIN: protein DGCR14-like. (445 aa)
LOC107914111U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
LOC107914725DEAD-box ATP-dependent RNA helicase 21-like; Belongs to the DEAD box helicase family. (671 aa)
LOC107915359pre-mRNA-splicing factor CWC22 homolog. (370 aa)
LOC107913998pre-mRNA-splicing factor SYF1-like. (913 aa)
LOC107915035Peptidyl-prolyl cis-trans isomerase CYP57-like. (496 aa)
LOC107916863Transmembrane protein 33 homolog. (339 aa)
LOC107916733WD repeat domain-containing protein 83-like. (299 aa)
LOC107918266Protein CWC15 homolog A-like isoform X1. (230 aa)
LOC107918638Small nuclear ribonucleoprotein Sm D2. (107 aa)
LOC107917472Uncharacterized protein LOC107917472. (202 aa)
LOC107920423DEAD-box ATP-dependent RNA helicase 2. (342 aa)
LOC107922165Zinc finger CCCH domain-containing protein 40-like. (503 aa)
LOC107920904pre-mRNA-splicing factor syf2-like. (307 aa)
LOC107922261Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
LOC107923020Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC107923072Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC107924019pre-mRNA-splicing factor SYF1-like. (913 aa)
LOC107924173Crooked neck-like protein 1. (705 aa)
LOC107924431Peptidyl-prolyl cis-trans isomerase CYP65-like isoform X1. (596 aa)
LOC107924880Uncharacterized membrane protein At1g16860-like isoform X1. (430 aa)
LOC107925138Small nuclear ribonucleoprotein-associated protein B-like. (287 aa)
LOC107925053Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5. (649 aa)
LOC107925545Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
LOC107927965Uncharacterized protein LOC107927965. (391 aa)
LOC107928220Small nuclear ribonucleoprotein G. (80 aa)
LOC107927452DEAD-box ATP-dependent RNA helicase 21-like; Belongs to the DEAD box helicase family. (683 aa)
LOC107929017Splicing factor 3B subunit 1-like. (1269 aa)
LOC107928143Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
LOC107928342Intron-binding protein aquarius-like isoform X1. (1521 aa)
LOC107928882Eukaryotic initiation factor 4A-3-like. (405 aa)
LOC107928887Pinin-like. (421 aa)
LOC107930300Uncharacterized membrane protein At1g16860-like. (430 aa)
LOC107929397Splicing factor 3B subunit 1-like. (1269 aa)
LOC107930376Small nuclear ribonucleoprotein-associated proteins B and B'-like. (291 aa)
LOC107930383Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5. (1180 aa)
LOC107932177U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
LOC107933242Protein pleiotropic regulatory locus 1-like. (484 aa)
LOC107934364Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC107934847DEAD-box ATP-dependent RNA helicase 21-like; Belongs to the DEAD box helicase family. (683 aa)
LOC107936651Uncharacterized protein LOC107936651. (288 aa)
LOC107936855Zinc finger CCHC domain-containing protein 8-like isoform X1. (587 aa)
LOC107936980Pinin-like. (412 aa)
LOC107937597Eukaryotic initiation factor 4A-3-like. (406 aa)
LOC107936887Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (114 aa)
LOC107938433116 kDa U5 small nuclear ribonucleoprotein component-like. (990 aa)
LOC107939223Pinin-like. (412 aa)
LOC107939473Splicing factor 3B subunit 6-like protein. (124 aa)
LOC107941271116 kDa U5 small nuclear ribonucleoprotein component-like. (990 aa)
LOC107942735Probable small nuclear ribonucleoprotein F. (88 aa)
LOC107943936Protein tipD-like. (533 aa)
LOC107943960pre-mRNA-processing-splicing factor 8-like. (230 aa)
LOC107944260Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (135 aa)
LOC107945064Uncharacterized protein LOC107945064 isoform X1. (493 aa)
LOC107945461Peptidyl-prolyl cis-trans isomerase CYP65-like. (596 aa)
LOC107946308Uncharacterized protein LOC107946308 isoform X1. (136 aa)
LOC107946114Eukaryotic initiation factor 4A-3-like. (408 aa)
LOC107947377Eukaryotic initiation factor 4A-3-like. (407 aa)
LOC107947183pre-mRNA-splicing factor syf2-like. (307 aa)
LOC107948395Uncharacterized protein LOC107948395. (113 aa)
LOC107948421Small nuclear ribonucleoprotein G. (68 aa)
LOC107949762pre-mRNA-splicing factor CLF1-like. (131 aa)
LOC107949108pre-mRNA-splicing factor syf2-like. (308 aa)
LOC107949227Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
LOC107949630Uncharacterized protein LOC107949630 isoform X1. (535 aa)
LOC107949781Uncharacterized protein LOC107949781 isoform X1. (1563 aa)
LOC107950784U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
LOC107950582pre-mRNA-splicing factor ISY1 homolog. (299 aa)
LOC107953282Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (225 aa)
LOC107953587Protein tipD-like. (533 aa)
LOC107954761pre-mRNA-processing factor 17-like. (538 aa)
LOC107955291pre-mRNA-processing factor 17-like isoform X1. (583 aa)
LOC107955905Peptidyl-prolyl cis-trans isomerase CYP71-like. (382 aa)
LOC107957208Small nuclear ribonucleoprotein Sm D2. (107 aa)
LOC107958014Eukaryotic initiation factor 4A-3-like. (278 aa)
LOC107958508Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5. (1186 aa)
LOC107961947Uncharacterized membrane protein At1g16860-like. (437 aa)
LOC107962288pre-mRNA-splicing factor SPF27 homolog isoform X1. (254 aa)
LOC107961710Peptidyl-prolyl cis-trans isomerase CYP71 isoform X1. (636 aa)
LOC107962870Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
LOC107962836Peptidyl-prolyl cis-trans isomerase CYP57-like. (497 aa)
LOC107962985Splicing factor 3B subunit 2-like. (601 aa)
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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