STRINGSTRING
LOC107889174 LOC107889174 LOC107886394 LOC107886394 LOC107924027 LOC107924027 LOC107886208 LOC107886208 LOC107924124 LOC107924124 LOC107924010 LOC107924010 RPS16 RPS16 LOC107962309 LOC107962309 LOC107961691 LOC107961691 LOC107960211 LOC107960211 LOC107958617 LOC107958617 LOC107954596 LOC107954596 LOC107954336 LOC107954336 LOC107953464 LOC107953464 LOC107953242 LOC107953242 LOC107951801 LOC107951801 LOC107949489 LOC107949489 LOC107949806 LOC107949806 LOC107948434 LOC107948434 LOC107946782 LOC107946782 LOC107947068 LOC107947068 LOC107946086 LOC107946086 LOC107946659 LOC107946659 LOC107945136 LOC107945136 LOC107945355 LOC107945355 LOC107943002 LOC107943002 LOC107942860 LOC107942860 LOC107942133 LOC107942133 LOC107940824 LOC107940824 LOC107941271 LOC107941271 LOC107939586 LOC107939586 LOC107937809 LOC107937809 LOC107938433 LOC107938433 LOC107936088 LOC107936088 LOC107935580 LOC107935580 LOC107934105 LOC107934105 LOC107933795 LOC107933795 LOC107934399 LOC107934399 LOC107933796 LOC107933796 LOC107933302 LOC107933302 LOC107932666 LOC107932666 LOC107931240 LOC107931240 LOC107930932 LOC107930932 LOC107922572 LOC107922572 LOC107920384 LOC107920384 LOC107920209 LOC107920209 LOC107920092 LOC107920092 LOC107919778 LOC107919778 LOC107915093 LOC107915093 LOC107914818 LOC107914818 LOC107912934 LOC107912934 LOC107912194 LOC107912194 LOC107931507 LOC107931507 LOC107927293 LOC107927293 LOC107912119 LOC107912119 LOC107908983 LOC107908983 LOC107908898 LOC107908898 LOC107907374 LOC107907374 LOC107905792 LOC107905792 LOC107903816 LOC107903816 LOC107903883 LOC107903883 LOC107904509 LOC107904509 LOC107901410 LOC107901410 LOC107901154 LOC107901154 LOC107897358 LOC107897358 LOC107893893 LOC107893893 LOC107894141 LOC107894141 LOC107895080 LOC107895080 LOC107894283 LOC107894283 LOC107891409 LOC107891409 LOC107889490 LOC107889490 LOC107891521 LOC107891521 LOC107891244 LOC107891244 LOC107889330 LOC107889330
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107889174116 kDa U5 small nuclear ribonucleoprotein component-like. (990 aa)
LOC107886394Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256|PROSITE-. (888 aa)
LOC107924027Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256|PROSITE-. (824 aa)
LOC107886208Elongation factor 2-like. (843 aa)
LOC107924124Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (783 aa)
LOC107924010Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (753 aa)
RPS1640S ribosomal protein S16. (145 aa)
LOC107962309Elongation factor 2-like. (843 aa)
LOC107961691L-arabinokinase-like. (991 aa)
LOC10796021130S ribosomal protein S5, chloroplastic-like; Belongs to the universal ribosomal protein uS5 family. (290 aa)
LOC107958617Diphosphomevalonate decarboxylase MVD1-like. (105 aa)
LOC107954596Elongation factor G, mitochondrial; Mitochondrial GTPase that catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (755 aa)
LOC1079543364-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic-like. (381 aa)
LOC10795346440S ribosomal protein S2-2-like; Belongs to the universal ribosomal protein uS5 family. (269 aa)
LOC1079532424-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic-like. (381 aa)
LOC107951801DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. (728 aa)
LOC107949489DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. (728 aa)
LOC10794980640S ribosomal protein S2-2-like; Belongs to the universal ribosomal protein uS5 family. (269 aa)
LOC107948434Elongation factor 2. (843 aa)
LOC107946782Phosphomevalonate kinase-like. (509 aa)
LOC107947068Elongation factor-like GTPase 1. (1027 aa)
LOC107946086DNA mismatch repair protein PMS1. (968 aa)
LOC107946659Phosphomevalonate kinase-like. (509 aa)
LOC10794513640S ribosomal protein S16-like; Belongs to the universal ribosomal protein uS9 family. (146 aa)
LOC107945355DNA topoisomerase 6 subunit B; Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP; Belongs to the TOP6B family. (669 aa)
LOC10794300230S ribosomal protein S9, chloroplastic; Belongs to the universal ribosomal protein uS9 family. (209 aa)
LOC10794286030S ribosomal protein S9, chloroplastic-like; Belongs to the universal ribosomal protein uS9 family. (135 aa)
LOC107942133Elongation factor G-like. (497 aa)
LOC107940824Homoserine kinase-like. (274 aa)
LOC107941271116 kDa U5 small nuclear ribonucleoprotein component-like. (990 aa)
LOC107939586DNA mismatch repair protein MLH3-like isoform X1. (1230 aa)
LOC107937809DNA mismatch repair protein MLH3-like isoform X1. (1217 aa)
LOC107938433116 kDa U5 small nuclear ribonucleoprotein component-like. (990 aa)
LOC107936088Galactokinase-like. (499 aa)
LOC10793558030S ribosomal protein S9, chloroplastic-like. (115 aa)
LOC10793410540S ribosomal protein S16-like; Belongs to the universal ribosomal protein uS9 family. (145 aa)
LOC107933795Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (960 aa)
LOC107934399DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks. (1462 aa)
LOC107933796Lon protease homolog 1, mitochondrial-like; Belongs to the peptidase S16 family. (444 aa)
LOC107933302Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family. (415 aa)
LOC107932666Elongation factor 2-like. (843 aa)
LOC107931240DNA mismatch repair protein PMS1-like isoform X1. (776 aa)
LOC107930932Mevalonate kinase. (385 aa)
LOC107922572Uncharacterized protein LOC107922572; Belongs to the universal ribosomal protein uS5 family. (544 aa)
LOC107920384DNA mismatch repair protein MLH1-like isoform X1. (751 aa)
LOC107920209Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprene-containing compounds such as sterols and terpenoids. Belongs to the diphosphomevalonate decarboxylase family. (415 aa)
LOC107920092Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256|PROSITE-. (888 aa)
LOC107919778Elongation factor 2. (843 aa)
LOC107915093DEAD-box ATP-dependent RNA helicase 56-like isoform X1. (141 aa)
LOC107914818Uncharacterized protein LOC107914818 isoform X1. (161 aa)
LOC107912934Elongation factor 2-like. (843 aa)
LOC107912194Lon protease homolog 2, peroxisomal; ATP-dependent serine protease that mediates the selective degradation of misfolded and unassembled polypeptides in the peroxisomal matrix. Necessary for type 2 peroxisome targeting signal (PTS2)-containing protein processing and facilitates peroxisome matrix protein import; Belongs to the peptidase S16 family. ECO:0000256|PROSITE-. (890 aa)
LOC107931507Galactokinase-like. (499 aa)
LOC107927293Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (968 aa)
LOC10791211940S ribosomal protein S2-2-like; Belongs to the universal ribosomal protein uS5 family. (269 aa)
LOC107908983Homoserine kinase-like. (363 aa)
LOC10790889840S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (145 aa)
LOC107907374Galacturonokinase-like. (437 aa)
LOC10790579230S ribosomal protein S5, chloroplastic-like; Belongs to the universal ribosomal protein uS5 family. (302 aa)
LOC107903816Elongation factor 2-like. (843 aa)
LOC107903883DEAD-box ATP-dependent RNA helicase 56-like isoform X1. (129 aa)
LOC107904509Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (783 aa)
LOC107901410Diphosphomevalonate decarboxylase MVD1-like. (105 aa)
LOC107901154Uncharacterized protein LOC107901154 isoform X1. (135 aa)
LOC107897358DNA repair protein RadA-like isoform X1. (636 aa)
LOC107893893Lon protease homolog, mitochondrial; ATP-dependent serine protease that mediates the selective degradation of misfolded, unassembled or oxidatively damaged polypeptides as well as certain short-lived regulatory proteins in the mitochondrial matrix. May also have a chaperone function in the assembly of inner membrane protein complexes. Participates in the regulation of mitochondrial gene expression and in the maintenance of the integrity of the mitochondrial genome. Binds to mitochondrial DNA in a site-specific manner; Belongs to the peptidase S16 family. (974 aa)
LOC107894141L-arabinokinase-like. (991 aa)
LOC107895080DNA mismatch repair protein MLH1-like isoform X1. (728 aa)
LOC10789428340S ribosomal protein S16-like; Belongs to the universal ribosomal protein uS9 family. (146 aa)
LOC10789140940S ribosomal protein S2-4-like; Belongs to the universal ribosomal protein uS5 family. (268 aa)
LOC10788949028S ribosomal protein S9, mitochondrial-like; Belongs to the universal ribosomal protein uS9 family. (371 aa)
LOC107891521116 kDa U5 small nuclear ribonucleoprotein component-like. (990 aa)
LOC10789124428S ribosomal protein S9, mitochondrial-like; Belongs to the universal ribosomal protein uS9 family. (371 aa)
LOC10788933040S ribosomal protein S2-4-like; Belongs to the universal ribosomal protein uS5 family. (268 aa)
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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