STRINGSTRING
LOC107949298 LOC107949298 LOC107886366 LOC107886366 LOC107887093 LOC107887093 LOC107887221 LOC107887221 LOC107887527 LOC107887527 LOC107889028 LOC107889028 LOC107889306 LOC107889306 LOC107889305 LOC107889305 LOC107890121 LOC107890121 LOC107890150 LOC107890150 LOC107891200 LOC107891200 LOC107891537 LOC107891537 LOC107891761 LOC107891761 LOC107892072 LOC107892072 LOC107890060 LOC107890060 LOC107892551 LOC107892551 LOC107892552 LOC107892552 LOC107893353 LOC107893353 LOC107893529 LOC107893529 LOC107896663 LOC107896663 LOC107896297 LOC107896297 LOC107896560 LOC107896560 LOC107897934 LOC107897934 LOC107896602 LOC107896602 LOC107898487 LOC107898487 LOC107899470 LOC107899470 LOC107898021 LOC107898021 LOC107900442 LOC107900442 LOC107901388 LOC107901388 LOC107901411 LOC107901411 LOC107899677 LOC107899677 LOC107900908 LOC107900908 LOC107902856 LOC107902856 LOC107902846 LOC107902846 LOC107902696 LOC107902696 LOC107903900 LOC107903900 LOC107906483 LOC107906483 LOC107907813 LOC107907813 LOC107906677 LOC107906677 LOC107910013 LOC107910013 LOC107909319 LOC107909319 LOC107912049 LOC107912049 LOC107912268 LOC107912268 LOC107911664 LOC107911664 LOC107913234 LOC107913234 LOC107913572 LOC107913572 LOC107913609 LOC107913609 LOC107914874 LOC107914874 LOC107914194 LOC107914194 LOC107916232 LOC107916232 LOC107916254 LOC107916254 LOC107918535 LOC107918535 LOC107920673 LOC107920673 LOC107920931 LOC107920931 LOC107923223 LOC107923223 LOC107922612 LOC107922612 LOC107922887 LOC107922887 LOC107923109 LOC107923109 LOC107925199 LOC107925199 LOC107925577 LOC107925577 LOC107924609 LOC107924609 LOC107925717 LOC107925717 LOC107927137 LOC107927137 LOC107927582 LOC107927582 LOC107927350 LOC107927350 LOC107927358 LOC107927358 LOC107929188 LOC107929188 LOC107929553 LOC107929553 LOC107934367 LOC107934367 LOC107935704 LOC107935704 LOC107936538 LOC107936538 LOC107937263 LOC107937263 LOC107937412 LOC107937412 LOC107937032 LOC107937032 LOC107937850 LOC107937850 LOC107938995 LOC107938995 LOC107940962 LOC107940962 LOC107940558 LOC107940558 LOC107946806 LOC107946806 LOC107947091 LOC107947091 LOC107948266 LOC107948266 LOC107947115 LOC107947115 LOC107948426 LOC107948426 LOC107947368 LOC107947368 LOC107948602 LOC107948602 LOC107949785 LOC107949785 LOC107950123 LOC107950123 LOC107950350 LOC107950350 LOC107949689 LOC107949689 LOC107950214 LOC107950214 LOC107951298 LOC107951298 LOC107952894 LOC107952894 LOC107953562 LOC107953562 LOC107954415 LOC107954415 LOC107954619 LOC107954619 LOC107956541 LOC107956541 LOC107959215 LOC107959215 LOC107958643 LOC107958643 LOC107960241 LOC107960241 LOC107960738 LOC107960738 LOC107962509 LOC107962509 LOC107962800 LOC107962800 LOC107963759 LOC107963759 NAC17 NAC17
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107949298Replication factor C subunit 3-like. (98 aa)
LOC107886366Probable DNA primase large subunit. (452 aa)
LOC107887093Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (626 aa)
LOC107887221Flap endonuclease GEN-like 1. (611 aa)
LOC107887527DNA ligase 1-like; Belongs to the ATP-dependent DNA ligase family. (248 aa)
LOC107889028Protein STICHEL-like 3. (1174 aa)
LOC107889306Putative F-box protein At1g67623. (181 aa)
LOC107889305Putative F-box protein At1g67623. (234 aa)
LOC107890121Uncharacterized protein LOC107890121. (122 aa)
LOC107890150Uncharacterized protein LOC107890150. (704 aa)
LOC107891200Replication factor C subunit 3 isoform X1. (354 aa)
LOC107891537NAC domain-containing protein 89-like. (371 aa)
LOC107891761Protein STICHEL-like 3. (1171 aa)
LOC107892072Flap endonuclease GEN-like 2 isoform X1. (587 aa)
LOC107890060NAC domain-containing protein 89-like. (479 aa)
LOC107892551Putative F-box protein At1g67623. (234 aa)
LOC107892552Putative F-box protein At1g67623. (234 aa)
LOC107893353LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like. (550 aa)
LOC107893529DNA polymerase. (1097 aa)
LOC107896663Protein STICHEL-like isoform X1. (1316 aa)
LOC107896297DNA replication ATP-dependent helicase/nuclease DNA2-like isoform X1. (1363 aa)
LOC107896560Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (383 aa)
LOC107897934DNA polymerase. (1531 aa)
LOC107896602DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (231 aa)
LOC107898487Flap endonuclease 1-like isoform X1. (96 aa)
LOC107899470Serine/threonine-protein kinase ATG1t-like. (289 aa)
LOC107898021DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (623 aa)
LOC107900442DNA replication complex GINS protein PSF3-like isoform X1. (185 aa)
LOC107901388Replication factor C subunit 4. (342 aa)
LOC107901411Uncharacterized protein LOC107901411. (1221 aa)
LOC107899677DNA polymerase delta small subunit-like. (439 aa)
LOC107900908Flap endonuclease GEN-like 1. (611 aa)
LOC107902856NAC domain-containing protein 86-like isoform X1. (445 aa)
LOC107902846Uncharacterized protein LOC107902846. (514 aa)
LOC107902696Putative F-box protein At1g67623. (207 aa)
LOC107903900DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (623 aa)
LOC107906483Probable DNA replication complex GINS protein PSF1 isoform X1. (204 aa)
LOC107907813Uncharacterized protein LOC107907813. (757 aa)
LOC107906677NAC domain-containing protein 89. (410 aa)
LOC107910013Probable DNA primase large subunit. (452 aa)
LOC107909319NAC domain-containing protein 62-like. (562 aa)
LOC107912049Putative F-box protein At1g67623. (284 aa)
LOC107912268NAC domain-containing protein 86-like. (457 aa)
LOC107911664Serine/threonine-protein kinase ATG1t-like. (289 aa)
LOC107913234DNA polymerase. (1531 aa)
LOC107913572Uncharacterized protein LOC107913572. (122 aa)
LOC107913609Replication factor C subunit 3-like isoform X1. (354 aa)
LOC107914874DNA replication complex GINS protein PSF1. (200 aa)
LOC107914194Protein STICHEL-like isoform X1. (1315 aa)
LOC107916232DNA replication complex GINS protein SLD5; The GINS complex plays an essential role in the initiation of DNA replication; Belongs to the GINS4/SLD5 family. (231 aa)
LOC107916254Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (383 aa)
LOC107918535Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (414 aa)
LOC107920673DNA polymerase. (1097 aa)
LOC107920931NAC domain-containing protein 62-like. (562 aa)
LOC107923223Protein CUP-SHAPED COTYLEDON 3-like. (254 aa)
LOC107922612Flap endonuclease 1-like. (74 aa)
LOC107922887NAC domain-containing protein 86-like. (451 aa)
LOC107923109Protein CUP-SHAPED COTYLEDON 3-like. (254 aa)
LOC107925199Protein STICHEL-like 3 isoform X1. (1184 aa)
LOC107925577Uncharacterized protein LOC107925577. (1199 aa)
LOC107924609F-box protein At2g35280-like. (246 aa)
LOC107925717NAC domain-containing protein 83-like. (402 aa)
LOC107927137DNA ligase. (796 aa)
LOC107927582Replication factor C subunit 1. (992 aa)
LOC107927350NAC domain-containing protein 21/22-like. (268 aa)
LOC107927358Uncharacterized protein LOC107927358. (720 aa)
LOC107929188Replication factor C subunit 2. (332 aa)
LOC107929553NAC domain-containing protein 14-like isoform X1. (877 aa)
LOC107934367DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family. (209 aa)
LOC107935704Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
LOC107936538Uncharacterized protein LOC107936538. (760 aa)
LOC107937263DNA ligase 1-like. (196 aa)
LOC107937412Replication factor C subunit 3-like isoform X1. (354 aa)
LOC107937032NAC domain-containing protein 30-like. (486 aa)
LOC107937850DNA polymerase delta subunit 4-like isoform X1. (116 aa)
LOC107938995Putative NAC domain-containing protein 94 isoform X1. (481 aa)
LOC107940962Probable DNA replication complex GINS protein PSF1. (151 aa)
LOC107940558Replication factor C subunit 5. (363 aa)
LOC107946806Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (858 aa)
LOC107947091DNA primase; Belongs to the eukaryotic-type primase small subunit family. (452 aa)
LOC107948266DNA ligase 1-like isoform X1. (180 aa)
LOC107947115DNA primase; Belongs to the eukaryotic-type primase small subunit family. (452 aa)
LOC107948426DNA polymerase delta small subunit-like. (439 aa)
LOC107947368Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (861 aa)
LOC107948602LOW QUALITY PROTEIN: DNA replication ATP-dependent helicase/nuclease DNA2-like. (1351 aa)
LOC107949785Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (626 aa)
LOC107950123Protein NTM1-like 9 isoform X1. (635 aa)
LOC107950350Uncharacterized protein LOC107950350 isoform X1. (194 aa)
LOC107949689Flap endonuclease 1-like. (86 aa)
LOC107950214Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
LOC107951298Protein NTM1-like 9 isoform X1. (635 aa)
LOC107952894Protein CUP-SHAPED COTYLEDON 3-like. (279 aa)
LOC107953562Protein STICHEL-like 2. (1006 aa)
LOC107954415Uncharacterized protein LOC107954415 isoform X1. (181 aa)
LOC107954619Protein CUP-SHAPED COTYLEDON 3-like. (279 aa)
LOC107956541Uncharacterized protein LOC107956541. (763 aa)
LOC107959215NAC domain-containing protein 40-like. (410 aa)
LOC107958643Protein CUP-SHAPED COTYLEDON 3-like. (293 aa)
LOC107960241Protein STICHEL-like 3. (1149 aa)
LOC107960738Putative F-box protein At1g67623. (150 aa)
LOC107962509Uncharacterized protein LOC107962509 isoform X1. (1225 aa)
LOC107962800Putative NAC domain-containing protein 94 isoform X1. (417 aa)
LOC107963759Replication factor C subunit 2-like. (332 aa)
NAC17Protein CUP-SHAPED COTYLEDON 3-like. (293 aa)
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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