STRINGSTRING
LOC107959215 LOC107959215 LOC107958643 LOC107958643 LOC107959354 LOC107959354 LOC107959376 LOC107959376 LOC107960652 LOC107960652 LOC107960262 LOC107960262 LOC107960241 LOC107960241 LOC107960738 LOC107960738 LOC107962509 LOC107962509 LOC107962091 LOC107962091 LOC107962304 LOC107962304 LOC107962800 LOC107962800 LOC107963835 LOC107963835 LOC107963759 LOC107963759 UBQ7 UBQ7 NAC17 NAC17 LOC107909874 LOC107909874 LOC107886219 LOC107886219 LOC107886941 LOC107886941 LOC107887093 LOC107887093 LOC107885980 LOC107885980 LOC107888639 LOC107888639 LOC107889028 LOC107889028 LOC107889306 LOC107889306 LOC107889305 LOC107889305 LOC107889580 LOC107889580 LOC107890121 LOC107890121 LOC107890150 LOC107890150 LOC107891200 LOC107891200 LOC107891537 LOC107891537 LOC107891761 LOC107891761 LOC107890060 LOC107890060 LOC107892551 LOC107892551 LOC107892552 LOC107892552 LOC107891143 LOC107891143 LOC107894674 LOC107894674 LOC107893215 LOC107893215 LOC107893305 LOC107893305 LOC107893353 LOC107893353 LOC107893602 LOC107893602 LOC107893804 LOC107893804 LOC107894311 LOC107894311 LOC107896663 LOC107896663 LOC107894697 LOC107894697 LOC107895222 LOC107895222 LOC107898576 LOC107898576 LOC107898806 LOC107898806 LOC107899100 LOC107899100 LOC107899144 LOC107899144 LOC107899473 LOC107899473 LOC107897553 LOC107897553 LOC107899613 LOC107899613 LOC107897699 LOC107897699 LOC107900397 LOC107900397 LOC107899095 LOC107899095 LOC107899485 LOC107899485 LOC107901388 LOC107901388 LOC107901411 LOC107901411 LOC107902026 LOC107902026 LOC107900574 LOC107900574 LOC107902856 LOC107902856 LOC107902846 LOC107902846 LOC107901884 LOC107901884 LOC107902696 LOC107902696 LOC107904663 LOC107904663 LOC107906690 LOC107906690 LOC107907498 LOC107907498 LOC107907813 LOC107907813 LOC107906677 LOC107906677 LOC107908539 LOC107908539 LOC107907353 LOC107907353 LOC107910051 LOC107910051 LOC107908838 LOC107908838 LOC107909319 LOC107909319 LOC107911773 LOC107911773 LOC107912049 LOC107912049 LOC107912268 LOC107912268 LOC107913261 LOC107913261 LOC107913572 LOC107913572 LOC107913609 LOC107913609 LOC107913786 LOC107913786 LOC107913654 LOC107913654 LOC107915273 LOC107915273 LOC107914194 LOC107914194 LOC107917119 LOC107917119 LOC107920261 LOC107920261 LOC107920282 LOC107920282 LOC107920577 LOC107920577 LOC107920717 LOC107920717 LOC107920931 LOC107920931 LOC107923223 LOC107923223 LOC107924003 LOC107924003 LOC107922887 LOC107922887 LOC107923109 LOC107923109 LOC107924380 LOC107924380 LOC107925199 LOC107925199 LOC107925577 LOC107925577 LOC107924609 LOC107924609 LOC107925717 LOC107925717 LOC107926416 LOC107926416 LOC107927067 LOC107927067 LOC107927037 LOC107927037 LOC107927582 LOC107927582 LOC107927350 LOC107927350 LOC107927358 LOC107927358 LOC107927951 LOC107927951 LOC107929188 LOC107929188 LOC107929553 LOC107929553 LOC107930852 LOC107930852 LOC107929824 LOC107929824 LOC107930869 LOC107930869 LOC107932102 LOC107932102 LOC107931226 LOC107931226 LOC107932081 LOC107932081 LOC107933861 LOC107933861 LOC107933010 LOC107933010 LOC107933019 LOC107933019 LOC107935128 LOC107935128 LOC107935704 LOC107935704 LOC107936538 LOC107936538 LOC107937412 LOC107937412 LOC107937524 LOC107937524 LOC107938017 LOC107938017 LOC107937032 LOC107937032 LOC107938249 LOC107938249 LOC107938774 LOC107938774 LOC107937850 LOC107937850 LOC107938502 LOC107938502 LOC107938995 LOC107938995 LOC107940796 LOC107940796 LOC107939855 LOC107939855 LOC107940558 LOC107940558 LOC107942558 LOC107942558 LOC107944187 LOC107944187 LOC107943981 LOC107943981 LOC107944078 LOC107944078 LOC107944229 LOC107944229 LOC107945156 LOC107945156 LOC107946490 LOC107946490 LOC107946806 LOC107946806 LOC107947368 LOC107947368 LOC107949159 LOC107949159 LOC107949298 LOC107949298 LOC107949490 LOC107949490 LOC107948601 LOC107948601 LOC107949785 LOC107949785 LOC107950123 LOC107950123 LOC107950350 LOC107950350 LOC107950214 LOC107950214 LOC107951298 LOC107951298 LOC107952894 LOC107952894 LOC107953031 LOC107953031 LOC107953562 LOC107953562 LOC107955072 LOC107955072 LOC107954415 LOC107954415 LOC107954619 LOC107954619 LOC107955651 LOC107955651 LOC107956541 LOC107956541
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107959215NAC domain-containing protein 40-like. (410 aa)
LOC107958643Protein CUP-SHAPED COTYLEDON 3-like. (293 aa)
LOC107959354DNA polymerase epsilon subunit 3-like. (211 aa)
LOC107959376DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2204 aa)
LOC107960652DNA polymerase eta-like. (740 aa)
LOC107960262Cullin-4-like; Belongs to the cullin family. (786 aa)
LOC107960241Protein STICHEL-like 3. (1149 aa)
LOC107960738Putative F-box protein At1g67623. (150 aa)
LOC107962509Uncharacterized protein LOC107962509 isoform X1. (1225 aa)
LOC107962091Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (550 aa)
LOC107962304DNA polymerase zeta processivity subunit-like isoform X1. (215 aa)
LOC107962800Putative NAC domain-containing protein 94 isoform X1. (417 aa)
LOC107963835E3 ubiquitin-protein ligase MIEL1-like. (294 aa)
LOC107963759Replication factor C subunit 2-like. (332 aa)
UBQ7ubiquitin-40S ribosomal protein S27a. (156 aa)
NAC17Protein CUP-SHAPED COTYLEDON 3-like. (293 aa)
LOC107909874DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (326 aa)
LOC107886219DNA polymerase zeta processivity subunit-like. (218 aa)
LOC107886941DNA polymerase kappa-like isoform X1. (662 aa)
LOC107887093Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (626 aa)
LOC107885980Ubiquitin fusion degradation protein 1 homolog. (303 aa)
LOC107888639WD repeat-containing protein 48-like. (765 aa)
LOC107889028Protein STICHEL-like 3. (1174 aa)
LOC107889306Putative F-box protein At1g67623. (181 aa)
LOC107889305Putative F-box protein At1g67623. (234 aa)
LOC107889580Cell division cycle protein 48 homolog; Belongs to the AAA ATPase family. (698 aa)
LOC107890121Uncharacterized protein LOC107890121. (122 aa)
LOC107890150Uncharacterized protein LOC107890150. (704 aa)
LOC107891200Replication factor C subunit 3 isoform X1. (354 aa)
LOC107891537NAC domain-containing protein 89-like. (371 aa)
LOC107891761Protein STICHEL-like 3. (1171 aa)
LOC107890060NAC domain-containing protein 89-like. (479 aa)
LOC107892551Putative F-box protein At1g67623. (234 aa)
LOC107892552Putative F-box protein At1g67623. (234 aa)
LOC107891143Cell division cycle protein 48 homolog. (805 aa)
LOC107894674WD repeat-containing protein 48-like isoform X1. (778 aa)
LOC107893215WD repeat-containing protein 48-like. (738 aa)
LOC107893305ESX-3 secretion system protein EccA3-like. (480 aa)
LOC107893353LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit A-like. (550 aa)
LOC107893602WD repeat-containing protein 48-like isoform X1. (761 aa)
LOC107893804E3 ubiquitin-protein ligase MIEL1-like isoform X1. (271 aa)
LOC107894311DNA polymerase. (1960 aa)
LOC107896663Protein STICHEL-like isoform X1. (1316 aa)
LOC107894697Uncharacterized protein LOC107894697. (2240 aa)
LOC107895222DNA polymerase IV-like isoform X1. (113 aa)
LOC107898576Ubiquitin fusion degradation protein 1 homolog. (321 aa)
LOC107898806Cell division cycle protein 48 homolog. (805 aa)
LOC107899100DNA polymerase zeta catalytic subunit-like. (2042 aa)
LOC107899144WD repeat-containing protein 48-like isoform X1. (764 aa)
LOC107899473Cell division cycle protein 48 homolog. (805 aa)
LOC107897553E3 ubiquitin-protein ligase MIEL1-like. (268 aa)
LOC107899613Uncharacterized protein LOC107899613 isoform X1. (1238 aa)
LOC107897699Cell division cycle protein 48 homolog. (805 aa)
LOC107900397Cullin-4-like; Belongs to the cullin family. (205 aa)
LOC107899095Cullin-4-like; Belongs to the cullin family. (812 aa)
LOC107899485E3 ubiquitin-protein ligase MIEL1-like isoform X1. (283 aa)
LOC107901388Replication factor C subunit 4. (342 aa)
LOC107901411Uncharacterized protein LOC107901411. (1221 aa)
LOC107902026Ubiquitin fusion degradation protein 1 homolog. (320 aa)
LOC107900574Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (550 aa)
LOC107902856NAC domain-containing protein 86-like isoform X1. (445 aa)
LOC107902846Uncharacterized protein LOC107902846. (514 aa)
LOC107901884Cullin-4-like; Belongs to the cullin family. (816 aa)
LOC107902696Putative F-box protein At1g67623. (207 aa)
LOC107904663Uncharacterized protein LOC107904663 isoform X1. (1263 aa)
LOC107906690DNA polymerase epsilon subunit 3-like. (169 aa)
LOC107907498DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (525 aa)
LOC107907813Uncharacterized protein LOC107907813. (757 aa)
LOC107906677NAC domain-containing protein 89. (410 aa)
LOC107908539DNA damage-binding protein 1a. (1088 aa)
LOC107907353DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (525 aa)
LOC107910051Proteasome-associated ATPase-like isoform X1; Belongs to the AAA ATPase family. (610 aa)
LOC107908838DNA polymerase kappa isoform X1. (689 aa)
LOC107909319NAC domain-containing protein 62-like. (562 aa)
LOC107911773Denticleless protein homolog. (511 aa)
LOC107912049Putative F-box protein At1g67623. (284 aa)
LOC107912268NAC domain-containing protein 86-like. (457 aa)
LOC107913261E3 ubiquitin-protein ligase MIEL1-like isoform X1. (270 aa)
LOC107913572Uncharacterized protein LOC107913572. (122 aa)
LOC107913609Replication factor C subunit 3-like isoform X1. (354 aa)
LOC107913786Cullin-4-like isoform X1; Belongs to the cullin family. (824 aa)
LOC107913654E3 ubiquitin-protein ligase MIEL1-like. (268 aa)
LOC107915273DNA polymerase eta-like. (740 aa)
LOC107914194Protein STICHEL-like isoform X1. (1315 aa)
LOC107917119Cullin-4-like; Belongs to the cullin family. (171 aa)
LOC107920261WD repeat-containing protein 48-like. (763 aa)
LOC107920282WD repeat-containing protein 48-like. (761 aa)
LOC107920577Protein BASIC PENTACYSTEINE4-like isoform X1. (356 aa)
LOC107920717DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1134 aa)
LOC107920931NAC domain-containing protein 62-like. (562 aa)
LOC107923223Protein CUP-SHAPED COTYLEDON 3-like. (254 aa)
LOC107924003Uncharacterized protein LOC107924003. (1234 aa)
LOC107922887NAC domain-containing protein 86-like. (451 aa)
LOC107923109Protein CUP-SHAPED COTYLEDON 3-like. (254 aa)
LOC107924380Denticleless protein homolog A-like isoform X1. (536 aa)
LOC107925199Protein STICHEL-like 3 isoform X1. (1184 aa)
LOC107925577Uncharacterized protein LOC107925577. (1199 aa)
LOC107924609F-box protein At2g35280-like. (246 aa)
LOC107925717NAC domain-containing protein 83-like. (402 aa)
LOC107926416Denticleless protein homolog isoform X1. (509 aa)
LOC107927067Cell division control protein 48 homolog D-like; Belongs to the AAA ATPase family. (239 aa)
LOC107927037E3 ubiquitin-protein ligase MIEL1-like. (308 aa)
LOC107927582Replication factor C subunit 1. (992 aa)
LOC107927350NAC domain-containing protein 21/22-like. (268 aa)
LOC107927358Uncharacterized protein LOC107927358. (720 aa)
LOC107927951Ubiquitin fusion degradation protein 1 homolog. (320 aa)
LOC107929188Replication factor C subunit 2. (332 aa)
LOC107929553NAC domain-containing protein 14-like isoform X1. (877 aa)
LOC107930852Protein CbxX, chromosomal-like. (478 aa)
LOC107929824Cullin-4-like; Belongs to the cullin family. (133 aa)
LOC107930869Cell division control protein 48 homolog B-like; Belongs to the AAA ATPase family. (630 aa)
LOC107932102E3 ubiquitin-protein ligase MIEL1-like. (270 aa)
LOC107931226Cell division cycle protein 48 homolog. (805 aa)
LOC107932081Protein cfxQ homolog isoform X1. (480 aa)
LOC107933861WD repeat-containing protein 48-like isoform X1. (763 aa)
LOC107933010Protein CbxX, chromosomal-like. (478 aa)
LOC107933019Cell division control protein 48 homolog B-like; Belongs to the AAA ATPase family. (630 aa)
LOC107935128Ubiquitin fusion degradation protein 1 homolog. (348 aa)
LOC107935704Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
LOC107936538Uncharacterized protein LOC107936538. (760 aa)
LOC107937412Replication factor C subunit 3-like isoform X1. (354 aa)
LOC107937524ubiquitin-40S ribosomal protein S27a-like. (156 aa)
LOC107938017E3 ubiquitin-protein ligase MIEL1-like. (315 aa)
LOC107937032NAC domain-containing protein 30-like. (486 aa)
LOC107938249Uncharacterized protein LOC107938249. (1261 aa)
LOC107938774Denticleless protein homolog. (510 aa)
LOC107937850DNA polymerase delta subunit 4-like isoform X1. (116 aa)
LOC107938502DNA damage-binding protein 1a-like. (1088 aa)
LOC107938995Putative NAC domain-containing protein 94 isoform X1. (481 aa)
LOC107940796Protein BASIC PENTACYSTEINE4-like. (310 aa)
LOC107939855Uncharacterized protein LOC107939855. (1261 aa)
LOC107940558Replication factor C subunit 5. (363 aa)
LOC107942558Uncharacterized protein LOC107942558 isoform X1. (1008 aa)
LOC107944187Cell division cycle protein 48 homolog. (805 aa)
LOC107943981DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (1324 aa)
LOC107944078Cullin-4-like; Belongs to the cullin family. (828 aa)
LOC107944229Uncharacterized AAA family ATPase y4kL-like. (332 aa)
LOC107945156LOW QUALITY PROTEIN: early endosome antigen 1. (664 aa)
LOC107946490Uncharacterized protein LOC107946490 isoform X1. (1261 aa)
LOC107946806Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (858 aa)
LOC107947368Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (861 aa)
LOC107949159E3 ubiquitin-protein ligase MIEL1-like. (270 aa)
LOC107949298Replication factor C subunit 3-like. (98 aa)
LOC107949490DNA repair protein REV1-like. (127 aa)
LOC107948601E3 ubiquitin-protein ligase MIEL1-like. (283 aa)
LOC107949785Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (626 aa)
LOC107950123Protein NTM1-like 9 isoform X1. (635 aa)
LOC107950350Uncharacterized protein LOC107950350 isoform X1. (194 aa)
LOC107950214Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (266 aa)
LOC107951298Protein NTM1-like 9 isoform X1. (635 aa)
LOC107952894Protein CUP-SHAPED COTYLEDON 3-like. (279 aa)
LOC107953031ubiquitin-40S ribosomal protein S27a-like. (156 aa)
LOC107953562Protein STICHEL-like 2. (1006 aa)
LOC107955072Uncharacterized protein LOC107955072. (569 aa)
LOC107954415Uncharacterized protein LOC107954415 isoform X1. (181 aa)
LOC107954619Protein CUP-SHAPED COTYLEDON 3-like. (279 aa)
LOC107955651Uncharacterized protein LOC107955651. (569 aa)
LOC107956541Uncharacterized protein LOC107956541. (763 aa)
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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