STRINGSTRING
LOC107939622 LOC107939622 LOC107888301 LOC107888301 LOC107887875 LOC107887875 LOC107893266 LOC107893266 LOC107896595 LOC107896595 LOC107903828 LOC107903828 LOC107904227 LOC107904227 LOC107904548 LOC107904548 LOC107912282 LOC107912282 LOC107916208 LOC107916208 LOC107922980 LOC107922980 LOC107924438 LOC107924438 LOC107929466 LOC107929466 LOC107932458 LOC107932458 LOC107938086 LOC107938086 LOC107947190 LOC107947190 LOC107909849 LOC107909849 ACT_GOSHI ACT_GOSHI UBQ7 UBQ7 ACT11 ACT11 ACT2 ACT2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC107939622Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1123 aa)
LOC107888301Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1122 aa)
LOC107887875Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1123 aa)
LOC107893266Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1122 aa)
LOC107896595Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1142 aa)
LOC107903828Transcription factor bHLH149-like. (199 aa)
LOC107904227Two-component response regulator-like APRR5 isoform X1. (706 aa)
LOC107904548Two-component response regulator-like APRR5. (634 aa)
LOC107912282Two-component response regulator-like APRR5 isoform X1. (652 aa)
LOC107916208Phytochrome B apoprotein. (1193 aa)
LOC107922980Two-component response regulator-like APRR5 isoform X1. (634 aa)
LOC107924438Two-component response regulator-like APRR3 isoform X1. (654 aa)
LOC107929466Two-component response regulator-like APRR5 isoform X1. (638 aa)
LOC107932458Actin. (377 aa)
LOC107938086Two-component response regulator-like APRR5 isoform X1. (705 aa)
LOC107947190Two-component response regulator-like APRR5 isoform X1. (636 aa)
LOC107909849Agamous-like MADS-box protein AGL9 homolog. (243 aa)
ACT_GOSHIActin; Actins are highly conserved proteins that are involved in various types of cell motility and are ubiquitously expressed in all eukaryotic cells; Belongs to the actin family. (377 aa)
UBQ7ubiquitin-40S ribosomal protein S27a. (156 aa)
ACT11Actin-7. (377 aa)
ACT2Actin-7-like. (377 aa)
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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