62 items (Gossypium hirsutum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107924098	Uncharacterized protein LOC107924098 isoform X1. (966 aa)
	LOC107886208	Elongation factor 2-like. (843 aa)
	LOC107887239	Alpha-amylase 3, chloroplastic-like isoform X1. (668 aa)
	LOC107890583	9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic-like. (602 aa)
	LOC107897254	Multiprotein-bridging factor 1b. (142 aa)
	LOC107899903	LOW QUALITY PROTEIN: transketolase, chloroplastic. (366 aa)
	LOC107903470	Small ubiquitin-related modifier. (98 aa)
	LOC107901883	Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic. (602 aa)
	LOC107903816	Elongation factor 2-like. (843 aa)
	LOC107905564	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (433 aa)
	LOC107905887	Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic. (667 aa)
	LOC107904981	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (410 aa)
	LOC107909170	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like. (572 aa)
	LOC107911586	Transketolase, chloroplastic-like. (745 aa)
	LOC107911840	Uncharacterized protein LOC107911840 isoform X1. (1002 aa)
	LOC107912385	Protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1. (589 aa)
	LOC107910680	Alpha-amylase 3, chloroplastic-like isoform X1. (877 aa)
	LOC107912934	Elongation factor 2-like. (843 aa)
	LOC107911906	Transketolase, chloroplastic-like isoform X1. (745 aa)
	LOC107913247	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (586 aa)
	LOC107912930	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like. (589 aa)
	LOC107913606	Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic. (667 aa)
	LOC107914792	Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic. (353 aa)
	LOC107916875	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (415 aa)
	LOC107917398	Alpha-amylase. (480 aa)
	LOC107917538	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (405 aa)
	LOC107920127	Alpha-amylase 3, chloroplastic-like. (892 aa)
	LOC107918579	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like. (589 aa)
	LOC107919729	Small ubiquitin-related modifier. (98 aa)
	LOC107921118	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (415 aa)
	LOC107924496	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (585 aa)
	LOC107928268	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like. (572 aa)
	LOC107932666	Elongation factor 2-like. (843 aa)
	LOC107932711	Small ubiquitin-related modifier. (98 aa)
	LOC107932636	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like. (597 aa)
	LOC107936185	9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like. (597 aa)
	LOC107936154	Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic. (602 aa)
	LOC107938137	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (413 aa)
	LOC107941756	Transketolase, chloroplastic-like. (745 aa)
	LOC107942317	9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic-like. (608 aa)
	LOC107942497	Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic. (606 aa)
	LOC107943904	Small ubiquitin-related modifier. (102 aa)
	LOC107946418	Alpha-amylase 3, chloroplastic-like isoform X1. (892 aa)
	LOC107945612	Transketolase, chloroplastic-like. (739 aa)
	LOC107947338	Ethylene-responsive transcription factor ERF105-like. (223 aa)
	LOC107947364	Probable carotenoid cleavage dioxygenase 4, chloroplastic. (606 aa)
	LOC107946820	Probable carotenoid cleavage dioxygenase 4, chloroplastic. (603 aa)
	LOC107947922	Protein TRANSPORT INHIBITOR RESPONSE 1. (586 aa)
	LOC107952895	Transketolase, chloroplastic-like. (745 aa)
	LOC107953203	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (587 aa)
	LOC107954570	Transketolase, chloroplastic. (745 aa)
	LOC107953983	Small ubiquitin-related modifier. (96 aa)
	LOC107955063	Small ubiquitin-related modifier. (97 aa)
	LOC107955663	Small ubiquitin-related modifier. (102 aa)
	LOC107957617	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (410 aa)
	LOC107958116	Alpha-amylase; Belongs to the glycosyl hydrolase 13 family. (435 aa)
	LOC107962309	Elongation factor 2-like. (843 aa)
	TIR1	Protein TRANSPORT INHIBITOR RESPONSE 1-like. (586 aa)
	PIP2;3	Aquaporin PIP2-7-like; Belongs to the MIP/aquaporin (TC 1.A.8) family. (278 aa)
	NIP6.1	Aquaporin NIP6-1-like; Belongs to the MIP/aquaporin (TC 1.A.8) family. (300 aa)
	ERF	Ethylene-responsive transcription factor ERF098-like. (127 aa)
	ERF9	Ethylene-responsive transcription factor 5-like. (315 aa)

Your Current Organism:

Gossypium hirsutum

NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERF	TIR1	M1RXN3	A4KA30	Ethylene-responsive transcription factor ERF098-like.	Protein TRANSPORT INHIBITOR RESPONSE 1-like.	0.463
LOC107886208	LOC107899903	A0A1U8HHJ9	A0A1U8IST7	Elongation factor 2-like.	LOW QUALITY PROTEIN: transketolase, chloroplastic.	0.446
LOC107886208	LOC107911586	A0A1U8HHJ9	A0A1U8JXF9	Elongation factor 2-like.	Transketolase, chloroplastic-like.	0.446
LOC107886208	LOC107911906	A0A1U8HHJ9	A0A1U8K321	Elongation factor 2-like.	Transketolase, chloroplastic-like isoform X1.	0.446
LOC107886208	LOC107941756	A0A1U8HHJ9	A0A1U8MVI9	Elongation factor 2-like.	Transketolase, chloroplastic-like.	0.446
LOC107886208	LOC107945612	A0A1U8HHJ9	A0A1U8NBG8	Elongation factor 2-like.	Transketolase, chloroplastic-like.	0.446
LOC107886208	LOC107952895	A0A1U8HHJ9	A0A1U8NX96	Elongation factor 2-like.	Transketolase, chloroplastic-like.	0.446
LOC107886208	LOC107954570	A0A1U8HHJ9	A0A1U8P371	Elongation factor 2-like.	Transketolase, chloroplastic.	0.446
LOC107899903	LOC107886208	A0A1U8IST7	A0A1U8HHJ9	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Elongation factor 2-like.	0.446
LOC107899903	LOC107903816	A0A1U8IST7	A0A1U8JB62	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Elongation factor 2-like.	0.446
LOC107899903	LOC107911586	A0A1U8IST7	A0A1U8JXF9	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Transketolase, chloroplastic-like.	0.656
LOC107899903	LOC107911906	A0A1U8IST7	A0A1U8K321	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Transketolase, chloroplastic-like isoform X1.	0.656
LOC107899903	LOC107912934	A0A1U8IST7	A0A1U8K2R4	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Elongation factor 2-like.	0.446
LOC107899903	LOC107932666	A0A1U8IST7	A0A1U8M065	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Elongation factor 2-like.	0.446
LOC107899903	LOC107941756	A0A1U8IST7	A0A1U8MVI9	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Transketolase, chloroplastic-like.	0.656
LOC107899903	LOC107945612	A0A1U8IST7	A0A1U8NBG8	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Transketolase, chloroplastic-like.	0.656
LOC107899903	LOC107952895	A0A1U8IST7	A0A1U8NX96	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Transketolase, chloroplastic-like.	0.656
LOC107899903	LOC107954570	A0A1U8IST7	A0A1U8P371	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Transketolase, chloroplastic.	0.656
LOC107899903	LOC107962309	A0A1U8IST7	A0A1U8PUU7	LOW QUALITY PROTEIN: transketolase, chloroplastic.	Elongation factor 2-like.	0.446
LOC107903816	LOC107899903	A0A1U8JB62	A0A1U8IST7	Elongation factor 2-like.	LOW QUALITY PROTEIN: transketolase, chloroplastic.	0.446

page 1 of 6

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

Experiments

Fusion

© STRING Consortium 2025

Credits

Access

Info

About