(5 nodes) UMP salvage, and Cell activation network (Xylaria grammica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EKO27_g9222	Uncharacterized protein. (227 aa)
	EKO27_g7060	Uncharacterized protein. (215 aa)
	EKO27_g5353	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (388 aa)
	EKO27_g3966	Uncharacterized protein. (261 aa)
	EKO27_g3054	HMG box domain-containing protein. (446 aa)

Your Current Organism:

Xylaria grammica

NCBI taxonomy Id: 363999
Other names: X. grammica, Xylaria sp. 5091, Xylaria sp. 5129, Xylariaceae sp. 5129, Xylariaceae sp. 5151, Xylariaceae sp. 5228

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EKO27_g3054	EKO27_g3966	A0A439DCD9	A0A439D9R0	HMG box domain-containing protein.	Uncharacterized protein.	0.673
EKO27_g3054	EKO27_g7060	A0A439DCD9	A0A439D173	HMG box domain-containing protein.	Uncharacterized protein.	0.646
EKO27_g3054	EKO27_g9222	A0A439DCD9	A0A439CUS0	HMG box domain-containing protein.	Uncharacterized protein.	0.673
EKO27_g3966	EKO27_g3054	A0A439D9R0	A0A439DCD9	Uncharacterized protein.	HMG box domain-containing protein.	0.673
EKO27_g3966	EKO27_g5353	A0A439D9R0	A0A439D5T5	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.763
EKO27_g3966	EKO27_g7060	A0A439D9R0	A0A439D173	Uncharacterized protein.	Uncharacterized protein.	0.945
EKO27_g3966	EKO27_g9222	A0A439D9R0	A0A439CUS0	Uncharacterized protein.	Uncharacterized protein.	0.841
EKO27_g5353	EKO27_g3966	A0A439D5T5	A0A439D9R0	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.763
EKO27_g5353	EKO27_g7060	A0A439D5T5	A0A439D173	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.875
EKO27_g5353	EKO27_g9222	A0A439D5T5	A0A439CUS0	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	Uncharacterized protein.	0.763
EKO27_g7060	EKO27_g3054	A0A439D173	A0A439DCD9	Uncharacterized protein.	HMG box domain-containing protein.	0.646
EKO27_g7060	EKO27_g3966	A0A439D173	A0A439D9R0	Uncharacterized protein.	Uncharacterized protein.	0.945
EKO27_g7060	EKO27_g5353	A0A439D173	A0A439D5T5	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.875
EKO27_g7060	EKO27_g9222	A0A439D173	A0A439CUS0	Uncharacterized protein.	Uncharacterized protein.	0.945
EKO27_g9222	EKO27_g3054	A0A439CUS0	A0A439DCD9	Uncharacterized protein.	HMG box domain-containing protein.	0.673
EKO27_g9222	EKO27_g3966	A0A439CUS0	A0A439D9R0	Uncharacterized protein.	Uncharacterized protein.	0.841
EKO27_g9222	EKO27_g5353	A0A439CUS0	A0A439D5T5	Uncharacterized protein.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.763
EKO27_g9222	EKO27_g7060	A0A439CUS0	A0A439D173	Uncharacterized protein.	Uncharacterized protein.	0.945