STRINGSTRING
TCM_000043 TCM_000043 TCM_001299 TCM_001299 TCM_002348 TCM_002348 TCM_005208 TCM_005208 TCM_011364 TCM_011364 TCM_021924 TCM_021924 TCM_024636 TCM_024636 TCM_025463 TCM_025463 TCM_025856 TCM_025856 TCM_026126 TCM_026126 TCM_032443 TCM_032443 TCM_035065 TCM_035065 TCM_043261 TCM_043261 TCM_012055 TCM_012055 TCM_027106 TCM_027106 TCM_036809 TCM_036809 TCM_036901 TCM_036901 TCM_037188 TCM_037188 TCM_040771 TCM_040771 TCM_042083 TCM_042083 TCM_039723 TCM_039723
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_000043Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family. (938 aa)
TCM_001299Ribosomal RNA processing 4. (319 aa)
TCM_002348Uncharacterized protein. (108 aa)
TCM_0052083'-5'-exoribonuclease family protein isoform 1. (316 aa)
TCM_0113643'-5' exonuclease, putative. (959 aa)
TCM_021924Ribonuclease II, putative isoform 1. (795 aa)
TCM_0246363'-5'-exoribonuclease family protein. (302 aa)
TCM_0254633'-5'-exoribonuclease family protein isoform 1. (453 aa)
TCM_025856Polynucleotidyl transferase, putative isoform 1. (920 aa)
TCM_026126Nucleic acid-binding isoform 3. (221 aa)
TCM_032443Nucleic acid-binding, OB-fold-like protein. (104 aa)
TCM_035065DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
TCM_0432613'-5'-exoribonuclease family protein isoform 7. (288 aa)
TCM_012055PNAS-3 related isoform 1. (240 aa)
TCM_027106RNA helicase, ATP-dependent, SK12/DOB1 protein. (987 aa)
TCM_036809Translation elongation factor EF1A/initiation factor IF2gamma family protein isoform 1. (778 aa)
TCM_036901Sas10/Utp3/C1D family. (206 aa)
TCM_037188Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
TCM_0407713'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
TCM_0420833'-5'-exoribonuclease family protein isoform 1. (256 aa)
TCM_039723RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1. (990 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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