STRINGSTRING
TCM_001299 TCM_001299 TCM_005208 TCM_005208 TCM_024636 TCM_024636 TCM_032443 TCM_032443 TCM_043261 TCM_043261 TCM_012055 TCM_012055 TCM_036901 TCM_036901 TCM_037188 TCM_037188 TCM_040771 TCM_040771 TCM_042083 TCM_042083
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_001299Ribosomal RNA processing 4. (319 aa)
TCM_0052083'-5'-exoribonuclease family protein isoform 1. (316 aa)
TCM_0246363'-5'-exoribonuclease family protein. (302 aa)
TCM_032443Nucleic acid-binding, OB-fold-like protein. (104 aa)
TCM_0432613'-5'-exoribonuclease family protein isoform 7. (288 aa)
TCM_012055PNAS-3 related isoform 1. (240 aa)
TCM_036901Sas10/Utp3/C1D family. (206 aa)
TCM_037188Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
TCM_0407713'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
TCM_0420833'-5'-exoribonuclease family protein isoform 1. (256 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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