105 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_000215	Homeodomain-like superfamily protein, putative. (284 aa)
	TCM_000665	Transcription factor APETALA2 isoform 1. (510 aa)
	TCM_000549	F-box family protein. (328 aa)
	TCM_000838	Growth-regulating factor 1, putative isoform 1. (631 aa)
	TCM_001086	Membrane lipoprotein. (306 aa)
	TCM_000956	Dof-type zinc finger DNA-binding family protein. (323 aa)
	TCM_000844	Integrase-type DNA-binding superfamily protein. (672 aa)
	TCM_000915	DNA binding protein, putative isoform 1. (334 aa)
	TCM_001611	Uncharacterized protein isoform 1. (675 aa)
	TCM_001135	VQ motif-containing protein. (472 aa)
	TCM_002654	Far-red impaired responsive family protein isoform 1. (258 aa)
	TCM_005064	Basic helix-loop-helix DNA-binding family protein. (497 aa)
	TCM_001716	Uncharacterized protein isoform 1. (759 aa)
	TCM_005131	Myc2 bHLH protein isoform 1. (614 aa)
	TCM_004747	Uncharacterized protein. (142 aa)
	TCM_005219	Plasma membrane-like protein isoform 1. (628 aa)
	TCM_005033	Late embryogenesis abundant hydroxyproline-rich glycoprotein family. (225 aa)
	TCM_005620	Squamosa promoter-binding-like protein 10, putative. (428 aa)
	TCM_005925	Basic helix-loop-helix DNA-binding superfamily protein, putative. (431 aa)
	TCM_004966	Uncharacterized protein. (295 aa)
	TCM_006827	BEL1-like homeodomain protein 6 isoform 1. (680 aa)
	TCM_007094	Filament-like plant protein 7, putative isoform 1. (1075 aa)
	TCM_007020	Uncharacterized protein. (387 aa)
	TCM_007859	Uncharacterized protein isoform 1. (812 aa)
	TCM_008557	SAUR family protein. (154 aa)
	TCM_006179	Jasmonate-zim-domain protein 12, putative isoform 2. (255 aa)
	TCM_006497	Eukaryotic translation initiation factor 3 subunit A, putative. (299 aa)
	TCM_008419	Jasmonate-zim-domain protein 10, putative. (201 aa)
	TCM_009707	VQ motif-containing protein, putative. (273 aa)
	TCM_011083	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1. (519 aa)
	TCM_011166	Homeodomain-like superfamily protein, putative isoform 2. (314 aa)
	TCM_010540	DORNROSCHEN-like, putative. (491 aa)
	TCM_010888	WUSCHEL related homeobox 1, putative isoform 1. (330 aa)
	TCM_011327	Homeodomain-like superfamily protein. (73 aa)
	TCM_011069	Uncharacterized protein. (354 aa)
	TCM_011787	IQ-domain 28, putative isoform 1. (563 aa)
	TCM_016792	KANADI like transcription factor, putative isoform 1. (494 aa)
	Tcw15	WRKY transcription factor 72, putative. (604 aa)
	TCM_017195	Uncharacterized protein isoform 1. (1027 aa)
	TCM_018678	Uncharacterized protein isoform 1. (1041 aa)
	TCM_011017	Jasmonate-zim-domain protein 3, putative isoform 1. (417 aa)
	TCM_018810	Uncharacterized protein isoform 1. (1051 aa)
	TCM_011071	Uncharacterized protein. (396 aa)
	TCM_019366	Uncharacterized protein isoform 1. (715 aa)
	TCM_019750	Uncharacterized protein. (186 aa)
	TCM_019730	AF4/FMR2 family member 1. (551 aa)
	TCM_018809	Plastid transcription factor 1, putative isoform 1. (366 aa)
	TCM_022025	Uncharacterized protein. (365 aa)
	TCM_020177	Basic helix-loop-helix DNA-binding superfamily protein isoform 1. (578 aa)
	TCM_021816	Uncharacterized protein. (437 aa)
	TCM_020328	GTD-binding domain-containing protein. (758 aa)
	TCM_021955	DNA binding with one finger 2.4, putative. (348 aa)
	TCM_022592	Syntaxin/t-SNARE family protein, putative. (390 aa)
	TCM_021294	Pathogenesis-related protein 10.5; Belongs to the BetVI family. (160 aa)
	TCM_025360	Tudor/PWWP/MBT superfamily protein. (303 aa)
	TCM_026832	O-Glycosyl hydrolases family 17 protein, putative isoform 1; Belongs to the glycosyl hydrolase 17 family. (612 aa)
	TCM_025375	Tudor/PWWP/MBT superfamily protein, putative isoform 1. (777 aa)
	TCM_034017	Ovate family protein 8, putative. (343 aa)
	TCM_034755	RING/U-box superfamily protein isoform 1. (448 aa)
	TCM_034652	Integrase-type DNA-binding superfamily protein. (680 aa)
	TCM_034655	Growth-regulating factor 1. (614 aa)
	TCM_035113	Uncharacterized protein. (210 aa)
	TCM_042602	RNI-like superfamily protein. (593 aa)
	TCM_042642	WAS/WASL-interacting protein family member 2, putative isoform 1. (413 aa)
	TCM_042973	Uncharacterized protein isoform 1. (935 aa)
	TCM_042784	F-box family protein, putative isoform 2. (348 aa)
	TCM_043021	Uncharacterized protein. (1416 aa)
	TCM_042990	Uncharacterized protein. (320 aa)
	TCM_035120	Filament-like plant protein, putative isoform 1. (713 aa)
	TCM_012913	Jasmonate-zim-domain protein 3, putative isoform 1. (386 aa)
	TCM_012488	Octicosapeptide/Phox/Bem1p family protein, putative. (712 aa)
	TCM_012755	WUSCHEL, putative isoform 2. (358 aa)
	TCM_014268	Uncharacterized protein. (331 aa)
	TCM_014471	AP2 11, putative. (268 aa)
	TCM_015288	Uncharacterized protein isoform 1. (396 aa)
	TCM_015342	Uncharacterized protein isoform 1. (678 aa)
	TCM_015640	Basic helix-loop-helix DNA-binding family protein, putative. (473 aa)
	TCM_015198	ATP binding protein, putative. (542 aa)
	TCM_015960	C2H2-like zinc finger protein, putative. (325 aa)
	TCM_014041	Uncharacterized protein. (242 aa)
	TCM_014264	Uncharacterized protein. (708 aa)
	TCM_016315	POX family protein isoform 1. (661 aa)
	TCM_015714	Basic helix-loop-helix DNA-binding family protein. (669 aa)
	TCM_028895	Uncharacterized protein. (503 aa)
	TCM_016357	Uncharacterized protein isoform 1. (452 aa)
	TCM_016413	Uncharacterized protein isoform 2. (795 aa)
	TCM_029655	Uncharacterized protein. (164 aa)
	TCM_029658	Uncharacterized protein. (239 aa)
	TCM_030051	Transcription factor, putative. (466 aa)
	TCM_028961	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1. (516 aa)
	TCM_029461	Jasmonate-zim-domain protein 8, putative. (121 aa)
	TCM_037495	Jasmonate-zim-domain protein 1, putative. (274 aa)
	TCM_029685	Transcription initiation factor TFIID subunit 11, putative. (710 aa)
	TCM_029836	F-box family protein, putative. (324 aa)
	TCM_037022	Plant natriuretic peptide A. (131 aa)
	TCM_037770	Iq-domain 31. (445 aa)
	TCM_037801	Uncharacterized protein. (218 aa)
	TCM_037821	Interactor of JAZ, putative isoform 1. (485 aa)
	TCM_037860	Uncharacterized protein isoform 1. (857 aa)
	TCM_041612	Uncharacterized protein. (880 aa)
	TCM_041604	VARLMGL domain-containing protein. (438 aa)
	TCM_041785	Uncharacterized protein isoform 1. (350 aa)
	TCM_042098	BEL1-like homeodomain 8, putative. (841 aa)
	TCM_042275	Ovate family protein 4, putative. (388 aa)
	TCM_041861	OBF-binding protein 3, putative isoform 1. (320 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_000215	TCM_000665	A0A061DFE2	A0A061DGG4	Homeodomain-like superfamily protein, putative.	Transcription factor APETALA2 isoform 1.	0.495
TCM_000215	TCM_002654	A0A061DFE2	A0A061DMV3	Homeodomain-like superfamily protein, putative.	Far-red impaired responsive family protein isoform 1.	0.455
TCM_000215	TCM_010540	A0A061DFE2	A0A061E8G4	Homeodomain-like superfamily protein, putative.	DORNROSCHEN-like, putative.	0.534
TCM_000215	TCM_016315	A0A061DFE2	A0A061G6K4	Homeodomain-like superfamily protein, putative.	POX family protein isoform 1.	0.550
TCM_000215	TCM_016792	A0A061DFE2	A0A061EBG9	Homeodomain-like superfamily protein, putative.	KANADI like transcription factor, putative isoform 1.	0.483
TCM_000215	TCM_042275	A0A061DFE2	A0A061GYZ3	Homeodomain-like superfamily protein, putative.	Ovate family protein 4, putative.	0.440
TCM_000549	TCM_001135	A0A061DGR6	A0A061DJL3	F-box family protein.	VQ motif-containing protein.	0.442
TCM_000549	TCM_011166	A0A061DGR6	A0A061E8B4	F-box family protein.	Homeodomain-like superfamily protein, putative isoform 2.	0.459
TCM_000549	TCM_019730	A0A061DGR6	A0A061EIJ6	F-box family protein.	AF4/FMR2 family member 1.	0.498
TCM_000549	TCM_030051	A0A061DGR6	A0A061GGF0	F-box family protein.	Transcription factor, putative.	0.477
TCM_000549	TCM_034652	A0A061DGR6	A0A061FFL0	F-box family protein.	Integrase-type DNA-binding superfamily protein.	0.431
TCM_000549	TCM_034655	A0A061DGR6	A0A061FG66	F-box family protein.	Growth-regulating factor 1.	0.463
TCM_000549	TCM_042275	A0A061DGR6	A0A061GYZ3	F-box family protein.	Ovate family protein 4, putative.	0.400
TCM_000549	TCM_043021	A0A061DGR6	A0A061FMW8	F-box family protein.	Uncharacterized protein.	0.405
TCM_000665	TCM_000215	A0A061DGG4	A0A061DFE2	Transcription factor APETALA2 isoform 1.	Homeodomain-like superfamily protein, putative.	0.495
TCM_000665	TCM_010540	A0A061DGG4	A0A061E8G4	Transcription factor APETALA2 isoform 1.	DORNROSCHEN-like, putative.	0.595
TCM_000665	TCM_014471	A0A061DGG4	A0A061FZF1	Transcription factor APETALA2 isoform 1.	AP2 11, putative.	0.484
TCM_000665	TCM_021955	A0A061DGG4	A0A061ET14	Transcription factor APETALA2 isoform 1.	DNA binding with one finger 2.4, putative.	0.449
TCM_000665	TCM_029836	A0A061DGG4	A0A061GMA5	Transcription factor APETALA2 isoform 1.	F-box family protein, putative.	0.414
TCM_000665	TCM_041861	A0A061DGG4	A0A061H030	Transcription factor APETALA2 isoform 1.	OBF-binding protein 3, putative isoform 1.	0.444