STRINGSTRING
TCM_001431 TCM_001431 TCM_006443 TCM_006443 TCM_006287 TCM_006287 TCM_023045 TCM_023045 TCM_026179 TCM_026179 TCM_012451 TCM_012451 TCM_012103 TCM_012103 TCM_016040 TCM_016040 TCM_041214 TCM_041214 TCM_040866 TCM_040866
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_001431Ribosomal protein S5/Elongation factor G/III/V family protein. (1027 aa)
TCM_0064432-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2. (458 aa)
TCM_006287CSL zinc finger domain-containing protein isoform 1. (82 aa)
TCM_023045Uncharacterized protein. (243 aa)
TCM_026179Endoribonucleases isoform 4. (632 aa)
TCM_0124512-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2. (833 aa)
TCM_012103Transducin/WD40 repeat-like superfamily protein isoform 1. (350 aa)
TCM_016040Elongation factor G, chloroplastic; Chloroplast-localized elongation factor EF-G involved in protein synthesis in plastids. Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl- tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome. (783 aa)
TCM_041214Uncharacterized protein. (247 aa)
TCM_040866Tetrapyrrole (Corrin/Porphyrin) Methylases isoform 1. (285 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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