13 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_001652	Uncharacterized protein isoform 1. (443 aa)
	TCM_002114	Cell differentiation, Rcd1-like protein, putative. (324 aa)
	TCM_005611	Ccr4-not transcription complex, putative isoform 1. (2413 aa)
	TCM_022079	RNA binding family protein, putative isoform 1. (1086 aa)
	TCM_026449	Transcription regulator NOT2/NOT3/NOT5 family protein. (904 aa)
	TCM_024996	DNAse I-like superfamily protein isoform 1. (602 aa)
	TCM_034910	Carbon catabolite repressor protein 4, putative isoform 1. (584 aa)
	TCM_014910	Ccr4-not transcription complex, putative. (2253 aa)
	TCM_046750	DNAse I-like superfamily protein. (406 aa)
	TCM_038150	Tetratricopeptide repeat-like superfamily protein. (851 aa)
	TCM_040506	Cell differentiation, Rcd1-like protein isoform 4. (322 aa)
	TCM_041933	NOT2 / NOT3 / NOT5 family isoform 1. (664 aa)
	TCM_042001	RNA binding family protein, putative isoform 1. (1045 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_001652	TCM_002114	A0A061DJL1	A0A061DKH4	Uncharacterized protein isoform 1.	Cell differentiation, Rcd1-like protein, putative.	0.962
TCM_001652	TCM_005611	A0A061DJL1	A0A061DVB3	Uncharacterized protein isoform 1.	Ccr4-not transcription complex, putative isoform 1.	0.991
TCM_001652	TCM_014910	A0A061DJL1	A0A061FZ97	Uncharacterized protein isoform 1.	Ccr4-not transcription complex, putative.	0.991
TCM_001652	TCM_022079	A0A061DJL1	A0A061ERU0	Uncharacterized protein isoform 1.	RNA binding family protein, putative isoform 1.	0.871
TCM_001652	TCM_024996	A0A061DJL1	A0A061F4X8	Uncharacterized protein isoform 1.	DNAse I-like superfamily protein isoform 1.	0.853
TCM_001652	TCM_026449	A0A061DJL1	A0A061F2E9	Uncharacterized protein isoform 1.	Transcription regulator NOT2/NOT3/NOT5 family protein.	0.988
TCM_001652	TCM_034910	A0A061DJL1	A0A061FGH0	Uncharacterized protein isoform 1.	Carbon catabolite repressor protein 4, putative isoform 1.	0.853
TCM_001652	TCM_038150	A0A061DJL1	A0A061GMW2	Uncharacterized protein isoform 1.	Tetratricopeptide repeat-like superfamily protein.	0.998
TCM_001652	TCM_040506	A0A061DJL1	A0A061GSP3	Uncharacterized protein isoform 1.	Cell differentiation, Rcd1-like protein isoform 4.	0.962
TCM_001652	TCM_041933	A0A061DJL1	A0A061GXL8	Uncharacterized protein isoform 1.	NOT2 / NOT3 / NOT5 family isoform 1.	0.992
TCM_001652	TCM_042001	A0A061DJL1	A0A061GXX5	Uncharacterized protein isoform 1.	RNA binding family protein, putative isoform 1.	0.871
TCM_001652	TCM_046750	A0A061DJL1	A0A061GED4	Uncharacterized protein isoform 1.	DNAse I-like superfamily protein.	0.695
TCM_002114	TCM_001652	A0A061DKH4	A0A061DJL1	Cell differentiation, Rcd1-like protein, putative.	Uncharacterized protein isoform 1.	0.962
TCM_002114	TCM_005611	A0A061DKH4	A0A061DVB3	Cell differentiation, Rcd1-like protein, putative.	Ccr4-not transcription complex, putative isoform 1.	0.972
TCM_002114	TCM_014910	A0A061DKH4	A0A061FZ97	Cell differentiation, Rcd1-like protein, putative.	Ccr4-not transcription complex, putative.	0.972
TCM_002114	TCM_022079	A0A061DKH4	A0A061ERU0	Cell differentiation, Rcd1-like protein, putative.	RNA binding family protein, putative isoform 1.	0.946
TCM_002114	TCM_024996	A0A061DKH4	A0A061F4X8	Cell differentiation, Rcd1-like protein, putative.	DNAse I-like superfamily protein isoform 1.	0.918
TCM_002114	TCM_026449	A0A061DKH4	A0A061F2E9	Cell differentiation, Rcd1-like protein, putative.	Transcription regulator NOT2/NOT3/NOT5 family protein.	0.991
TCM_002114	TCM_034910	A0A061DKH4	A0A061FGH0	Cell differentiation, Rcd1-like protein, putative.	Carbon catabolite repressor protein 4, putative isoform 1.	0.918
TCM_002114	TCM_038150	A0A061DKH4	A0A061GMW2	Cell differentiation, Rcd1-like protein, putative.	Tetratricopeptide repeat-like superfamily protein.	0.940