STRINGSTRING
TCM_004856 TCM_004856 TCM_004858 TCM_004858 TCM_004826 TCM_004826 TCM_004857 TCM_004857 TCM_007650 TCM_007650 TCM_017564 TCM_017564 TCM_011517 TCM_011517 TCM_020811 TCM_020811 TCM_025866 TCM_025866 TCM_043598 TCM_043598 TCM_016341 TCM_016341 TCM_026902 TCM_026902 TCM_027140 TCM_027140 TCM_036891 TCM_036891
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_004856Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 3. (746 aa)
TCM_004858Uncharacterized protein. (191 aa)
TCM_004826P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1. (838 aa)
TCM_004857RNA helicase family protein. (225 aa)
TCM_007650D111/G-patch domain-containing protein. (195 aa)
TCM_017564Suppressor of abi3-5 isoform 1. (1069 aa)
TCM_011517RNA helicase family protein isoform 1. (764 aa)
TCM_020811SMAD/FHA domain-containing-like protein. (408 aa)
TCM_025866MIF4G domain and MA3 domain-containing protein isoform 2. (820 aa)
TCM_043598P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 1. (578 aa)
TCM_016341D111/G-patch domain-containing protein isoform 1. (371 aa)
TCM_026902D111/G-patch domain-containing protein. (382 aa)
TCM_027140Nucleic acid binding,RNA binding isoform 1. (375 aa)
TCM_036891RNA recognition motif-containing protein isoform 1. (985 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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