35 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_001066	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1. (221 aa)
	TCM_001192	SAP domain-containing protein isoform 1. (780 aa)
	TCM_005726	Mago nashi family protein. (151 aa)
	TCM_005460	SIN3 associated polypeptide P18. (153 aa)
	TCM_006150	Smg-4/UPF3 family protein, putative isoform 1. (514 aa)
	TCM_006427	Protein interaction regulator family protein isoform 1. (427 aa)
	TCM_007433	RNA-binding family protein isoform 1. (194 aa)
	TCM_008184	CAP-binding protein 20 isoform 1. (309 aa)
	TCM_011260	THO complex subunit 2 isoform 1. (1853 aa)
	TCM_007746	Eukaryotic initiation factor 4A-III isoform 1. (406 aa)
	TCM_011094	CCCH-type zinc finger family protein, putative. (751 aa)
	TCM_022057	Uncharacterized protein isoform 1. (221 aa)
	TCM_021972	RNA-binding family protein. (240 aa)
	TCM_025487	Tho complex subunit 7/Mft1p. (241 aa)
	TCM_030526	Transducin/WD40 repeat-like superfamily protein. (313 aa)
	TCM_033823	THO complex subunit 5 B. (842 aa)
	TCM_033734	RNA-binding family protein, putative isoform 1. (262 aa)
	TCM_042816	RNA-binding family protein, putative isoform 1. (299 aa)
	TCM_043050	Regulator of nonsense transcripts 2 isoform 1. (1193 aa)
	TCM_044779	Nuclear matrix protein-related isoform 1. (602 aa)
	TCM_014807	RNA-binding family protein. (230 aa)
	TCM_015799	Regulator of nonsense transcripts 1. (1266 aa)
	TCM_027151	DEAD/DEAH box RNA helicase family protein isoform 1. (427 aa)
	TCM_028841	Smg-4/UPF3 family protein, putative isoform 1. (523 aa)
	TCM_029844	Telomerase activating protein Est1, putative. (1017 aa)
	TCM_037258	RNA-binding domain, putative. (254 aa)
	TCM_037013	DEAD/DEAH box RNA helicase family protein isoform 1. (485 aa)
	TCM_037016	Concanavalin A-like lectin protein kinase family protein, putative. (638 aa)
	TCM_038042	Nucleic acid binding protein, putative. (539 aa)
	TCM_040914	Smg-7, putative isoform 1. (989 aa)
	TCM_037622	DWD hypersensitive to ABA 1. (371 aa)
	TCM_040864	RNA-binding family protein. (199 aa)
	ABH1	ARM repeat superfamily protein isoform 1. (864 aa)
	TCM_042011	C2H2 zinc-finger protein SERRATE isoform 1. (743 aa)
	TCM_041883	RNA-binding family protein. (241 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABH1	TCM_001066	A0A061GUF2	A0A061DHW1	ARM repeat superfamily protein isoform 1.	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	0.792
ABH1	TCM_001192	A0A061GUF2	A0A061DJT0	ARM repeat superfamily protein isoform 1.	SAP domain-containing protein isoform 1.	0.573
ABH1	TCM_005726	A0A061GUF2	A0A061DVQ4	ARM repeat superfamily protein isoform 1.	Mago nashi family protein.	0.902
ABH1	TCM_006150	A0A061GUF2	A0A061DY66	ARM repeat superfamily protein isoform 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.840
ABH1	TCM_006427	A0A061GUF2	A0A061DYA1	ARM repeat superfamily protein isoform 1.	Protein interaction regulator family protein isoform 1.	0.463
ABH1	TCM_007433	A0A061GUF2	A0A061E1C3	ARM repeat superfamily protein isoform 1.	RNA-binding family protein isoform 1.	0.792
ABH1	TCM_007746	A0A061GUF2	A0A061EA73	ARM repeat superfamily protein isoform 1.	Eukaryotic initiation factor 4A-III isoform 1.	0.857
ABH1	TCM_008184	A0A061GUF2	A0A061E387	ARM repeat superfamily protein isoform 1.	CAP-binding protein 20 isoform 1.	0.999
ABH1	TCM_011260	A0A061GUF2	A0A061E8J4	ARM repeat superfamily protein isoform 1.	THO complex subunit 2 isoform 1.	0.975
ABH1	TCM_014807	A0A061GUF2	A0A061FZR7	ARM repeat superfamily protein isoform 1.	RNA-binding family protein.	0.792
ABH1	TCM_015799	A0A061GUF2	A0A061G3G4	ARM repeat superfamily protein isoform 1.	Regulator of nonsense transcripts 1.	0.952
ABH1	TCM_021972	A0A061GUF2	A0A061ET42	ARM repeat superfamily protein isoform 1.	RNA-binding family protein.	0.888
ABH1	TCM_022057	A0A061GUF2	A0A061EST1	ARM repeat superfamily protein isoform 1.	Uncharacterized protein isoform 1.	0.769
ABH1	TCM_025487	A0A061GUF2	A0A061F6H5	ARM repeat superfamily protein isoform 1.	Tho complex subunit 7/Mft1p.	0.864
ABH1	TCM_027151	A0A061GUF2	A0A061G7G0	ARM repeat superfamily protein isoform 1.	DEAD/DEAH box RNA helicase family protein isoform 1.	0.788
ABH1	TCM_028841	A0A061GUF2	A0A061GAH0	ARM repeat superfamily protein isoform 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.840
ABH1	TCM_029844	A0A061GUF2	A0A061GFN7	ARM repeat superfamily protein isoform 1.	Telomerase activating protein Est1, putative.	0.810
ABH1	TCM_030526	A0A061GUF2	A0A061FBI7	ARM repeat superfamily protein isoform 1.	Transducin/WD40 repeat-like superfamily protein.	0.780
ABH1	TCM_033734	A0A061GUF2	A0A061FIM6	ARM repeat superfamily protein isoform 1.	RNA-binding family protein, putative isoform 1.	0.888
ABH1	TCM_033823	A0A061GUF2	A0A061FCH6	ARM repeat superfamily protein isoform 1.	THO complex subunit 5 B.	0.890