15 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_001066	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1. (221 aa)
	TCM_001192	SAP domain-containing protein isoform 1. (780 aa)
	TCM_005726	Mago nashi family protein. (151 aa)
	TCM_005460	SIN3 associated polypeptide P18. (153 aa)
	TCM_006150	Smg-4/UPF3 family protein, putative isoform 1. (514 aa)
	TCM_006427	Protein interaction regulator family protein isoform 1. (427 aa)
	TCM_007433	RNA-binding family protein isoform 1. (194 aa)
	TCM_007746	Eukaryotic initiation factor 4A-III isoform 1. (406 aa)
	TCM_043050	Regulator of nonsense transcripts 2 isoform 1. (1193 aa)
	TCM_014807	RNA-binding family protein. (230 aa)
	TCM_015799	Regulator of nonsense transcripts 1. (1266 aa)
	TCM_028841	Smg-4/UPF3 family protein, putative isoform 1. (523 aa)
	TCM_029844	Telomerase activating protein Est1, putative. (1017 aa)
	TCM_040914	Smg-7, putative isoform 1. (989 aa)
	TCM_040864	RNA-binding family protein. (199 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_001066	TCM_001192	A0A061DHW1	A0A061DJT0	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	SAP domain-containing protein isoform 1.	0.938
TCM_001066	TCM_005460	A0A061DHW1	A0A061DVR5	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	SIN3 associated polypeptide P18.	0.909
TCM_001066	TCM_005726	A0A061DHW1	A0A061DVQ4	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	Mago nashi family protein.	0.745
TCM_001066	TCM_006150	A0A061DHW1	A0A061DY66	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.789
TCM_001066	TCM_006427	A0A061DHW1	A0A061DYA1	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	Protein interaction regulator family protein isoform 1.	0.862
TCM_001066	TCM_007433	A0A061DHW1	A0A061E1C3	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	RNA-binding family protein isoform 1.	0.901
TCM_001066	TCM_007746	A0A061DHW1	A0A061EA73	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	Eukaryotic initiation factor 4A-III isoform 1.	0.860
TCM_001066	TCM_014807	A0A061DHW1	A0A061FZR7	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	RNA-binding family protein.	0.988
TCM_001066	TCM_015799	A0A061DHW1	A0A061G3G4	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	Regulator of nonsense transcripts 1.	0.825
TCM_001066	TCM_028841	A0A061DHW1	A0A061GAH0	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.789
TCM_001066	TCM_040864	A0A061DHW1	A0A061GTK7	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	RNA-binding family protein.	0.900
TCM_001066	TCM_043050	A0A061DHW1	A0A061FME2	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	Regulator of nonsense transcripts 2 isoform 1.	0.910
TCM_001192	TCM_001066	A0A061DJT0	A0A061DHW1	SAP domain-containing protein isoform 1.	RNA-binding (RRM/RBD/RNP motifs) family protein isoform 1.	0.938
TCM_001192	TCM_005460	A0A061DJT0	A0A061DVR5	SAP domain-containing protein isoform 1.	SIN3 associated polypeptide P18.	0.999
TCM_001192	TCM_005726	A0A061DJT0	A0A061DVQ4	SAP domain-containing protein isoform 1.	Mago nashi family protein.	0.943
TCM_001192	TCM_006150	A0A061DJT0	A0A061DY66	SAP domain-containing protein isoform 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.653
TCM_001192	TCM_006427	A0A061DJT0	A0A061DYA1	SAP domain-containing protein isoform 1.	Protein interaction regulator family protein isoform 1.	0.975
TCM_001192	TCM_007433	A0A061DJT0	A0A061E1C3	SAP domain-containing protein isoform 1.	RNA-binding family protein isoform 1.	0.938
TCM_001192	TCM_007746	A0A061DJT0	A0A061EA73	SAP domain-containing protein isoform 1.	Eukaryotic initiation factor 4A-III isoform 1.	0.906
TCM_001192	TCM_014807	A0A061DJT0	A0A061FZR7	SAP domain-containing protein isoform 1.	RNA-binding family protein.	0.938