24 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_001534	Uncharacterized protein isoform 1. (395 aa)
	TCM_005726	Mago nashi family protein. (151 aa)
	TCM_006420	Partner of Y14-MAGO isoform 1. (232 aa)
	TCM_006150	Smg-4/UPF3 family protein, putative isoform 1. (514 aa)
	TCM_007746	Eukaryotic initiation factor 4A-III isoform 1. (406 aa)
	TCM_016908	DEAD-box ATP-dependent RNA helicase 46 isoform 2; Belongs to the DEAD box helicase family. (772 aa)
	TCM_021458	DEAD box RNA helicase family protein isoform 2. (1158 aa)
	TCM_031736	JHL23J11.4 protein isoform 1. (470 aa)
	TCM_043050	Regulator of nonsense transcripts 2 isoform 1. (1193 aa)
	TCM_034795	Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1. (1194 aa)
	TCM_043141	Decapping 2 isoform 1. (321 aa)
	TCM_012168	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1; Belongs to the DEAD box helicase family. (626 aa)
	TCM_015799	Regulator of nonsense transcripts 1. (1266 aa)
	TCM_028633	CASC3/Barentsz eIF4AIII binding, putative isoform 1. (711 aa)
	TCM_028841	Smg-4/UPF3 family protein, putative isoform 1. (523 aa)
	TCM_029008	DEA(D/H)-box RNA helicase family protein; Belongs to the DEAD box helicase family. (505 aa)
	TCM_029844	Telomerase activating protein Est1, putative. (1017 aa)
	TCM_029910	C-terminal domain phosphatase-like 1 isoform 2. (984 aa)
	TCM_037921	Uncharacterized protein isoform 1. (715 aa)
	TCM_040914	Smg-7, putative isoform 1. (989 aa)
	TCM_040864	RNA-binding family protein. (199 aa)
	ABH1	ARM repeat superfamily protein isoform 1. (864 aa)
	TCM_041589	Uncharacterized protein isoform 1. (1219 aa)
	TCM_041685	RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1. (1441 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABH1	TCM_001534	A0A061GUF2	A0A061DJ65	ARM repeat superfamily protein isoform 1.	Uncharacterized protein isoform 1.	0.493
ABH1	TCM_005726	A0A061GUF2	A0A061DVQ4	ARM repeat superfamily protein isoform 1.	Mago nashi family protein.	0.902
ABH1	TCM_006150	A0A061GUF2	A0A061DY66	ARM repeat superfamily protein isoform 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.840
ABH1	TCM_007746	A0A061GUF2	A0A061EA73	ARM repeat superfamily protein isoform 1.	Eukaryotic initiation factor 4A-III isoform 1.	0.857
ABH1	TCM_012168	A0A061GUF2	A0A061FVC8	ARM repeat superfamily protein isoform 1.	P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1; Belongs to the DEAD box helicase family.	0.428
ABH1	TCM_015799	A0A061GUF2	A0A061G3G4	ARM repeat superfamily protein isoform 1.	Regulator of nonsense transcripts 1.	0.952
ABH1	TCM_016908	A0A061GUF2	A0A061EJG4	ARM repeat superfamily protein isoform 1.	DEAD-box ATP-dependent RNA helicase 46 isoform 2; Belongs to the DEAD box helicase family.	0.428
ABH1	TCM_021458	A0A061GUF2	A0A061ER62	ARM repeat superfamily protein isoform 1.	DEAD box RNA helicase family protein isoform 2.	0.428
ABH1	TCM_028841	A0A061GUF2	A0A061GAH0	ARM repeat superfamily protein isoform 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.840
ABH1	TCM_029008	A0A061GUF2	A0A061GD47	ARM repeat superfamily protein isoform 1.	DEA(D/H)-box RNA helicase family protein; Belongs to the DEAD box helicase family.	0.428
ABH1	TCM_029844	A0A061GUF2	A0A061GFN7	ARM repeat superfamily protein isoform 1.	Telomerase activating protein Est1, putative.	0.810
ABH1	TCM_029910	A0A061GUF2	A0A061GFW4	ARM repeat superfamily protein isoform 1.	C-terminal domain phosphatase-like 1 isoform 2.	0.703
ABH1	TCM_040864	A0A061GUF2	A0A061GTK7	ARM repeat superfamily protein isoform 1.	RNA-binding family protein.	0.881
ABH1	TCM_040914	A0A061GUF2	A0A061GSQ9	ARM repeat superfamily protein isoform 1.	Smg-7, putative isoform 1.	0.810
ABH1	TCM_041589	A0A061GUF2	A0A061GW57	ARM repeat superfamily protein isoform 1.	Uncharacterized protein isoform 1.	0.443
ABH1	TCM_041685	A0A061GUF2	A0A061GXA3	ARM repeat superfamily protein isoform 1.	RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1.	0.489
ABH1	TCM_043050	A0A061GUF2	A0A061FME2	ARM repeat superfamily protein isoform 1.	Regulator of nonsense transcripts 2 isoform 1.	0.723
ABH1	TCM_043141	A0A061GUF2	A0A061FPQ5	ARM repeat superfamily protein isoform 1.	Decapping 2 isoform 1.	0.554
TCM_001534	ABH1	A0A061DJ65	A0A061GUF2	Uncharacterized protein isoform 1.	ARM repeat superfamily protein isoform 1.	0.493
TCM_001534	TCM_005726	A0A061DJ65	A0A061DVQ4	Uncharacterized protein isoform 1.	Mago nashi family protein.	0.426