34 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_005467	Nucleotidyltransferase family protein isoform 1. (722 aa)
	TCM_005611	Ccr4-not transcription complex, putative isoform 1. (2413 aa)
	TCM_001299	Ribosomal RNA processing 4. (319 aa)
	TCM_001258	RNA polymerase II, Rpb4, core protein isoform 1. (138 aa)
	TCM_002009	Topoisomerase II-associated protein PAT1, putative isoform 1. (798 aa)
	TCM_002348	Uncharacterized protein. (108 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
	TCM_041933	NOT2 / NOT3 / NOT5 family isoform 1. (664 aa)
	TCM_041300	Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (280 aa)
	TCM_040771	3'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
	TCM_037083	Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (274 aa)
	LSM1-2	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	TCM_027417	CCR4-associated factor 1. (356 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
	TCM_027418	Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
	TCM_027415	Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
	TCM_012055	PNAS-3 related isoform 1. (240 aa)
	TCM_014910	Ccr4-not transcription complex, putative. (2253 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	TCM_043331	Polynucleotidyl transferase, putative. (252 aa)
	TCM_043141	Decapping 2 isoform 1. (321 aa)
	TCM_043261	3'-5'-exoribonuclease family protein isoform 7. (288 aa)
	TCM_032439	Topoisomerase II-associated protein PAT1, putative. (841 aa)
	TCM_034910	Carbon catabolite repressor protein 4, putative isoform 1. (584 aa)
	TCM_032442	Uncharacterized protein. (512 aa)
	TCM_026258	F-box associated ubiquitination effector family protein, putative. (410 aa)
	TCM_024996	DNAse I-like superfamily protein isoform 1. (602 aa)
	TCM_026449	Transcription regulator NOT2/NOT3/NOT5 family protein. (904 aa)
	TCM_022844	Polynucleotidyl transferase. (285 aa)
	TCM_025463	3'-5'-exoribonuclease family protein isoform 1. (453 aa)
	TCM_024636	3'-5'-exoribonuclease family protein. (302 aa)
	TCM_022706	mRNA-decapping enzyme-like protein. (376 aa)
	TCM_019826	Small nuclear ribonucleoprotein family protein isoform 1. (91 aa)
	TCM_006895	Polynucleotidyl transferase, putative. (205 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM1-2	A0A061GBQ5	A0A061GLG0	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.901
LSM1	LSM3	A0A061GBQ5	A0A061FQC9	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.993
LSM1	LSM5	A0A061GBQ5	A0A061DMN8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.992
LSM1	TCM_019826	A0A061GBQ5	A0A061EIY5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein family protein isoform 1.	0.982
LSM1	TCM_022706	A0A061GBQ5	A0A061EVA3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA-decapping enzyme-like protein.	0.836
LSM1	TCM_043141	A0A061GBQ5	A0A061FPQ5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Decapping 2 isoform 1.	0.930
LSM1-2	LSM1	A0A061GLG0	A0A061GBQ5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.901
LSM1-2	LSM3	A0A061GLG0	A0A061FQC9	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.993
LSM1-2	LSM5	A0A061GLG0	A0A061DMN8	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.992
LSM1-2	TCM_019826	A0A061GLG0	A0A061EIY5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Small nuclear ribonucleoprotein family protein isoform 1.	0.982
LSM1-2	TCM_022706	A0A061GLG0	A0A061EVA3	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	mRNA-decapping enzyme-like protein.	0.836
LSM1-2	TCM_043141	A0A061GLG0	A0A061FPQ5	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	Decapping 2 isoform 1.	0.930
LSM3	LSM1	A0A061FQC9	A0A061GBQ5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.993
LSM3	LSM1-2	A0A061FQC9	A0A061GLG0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.993
LSM3	LSM5	A0A061FQC9	A0A061DMN8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	TCM_019826	A0A061FQC9	A0A061EIY5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein family protein isoform 1.	0.999
LSM3	TCM_022706	A0A061FQC9	A0A061EVA3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	mRNA-decapping enzyme-like protein.	0.896
LSM3	TCM_043141	A0A061FQC9	A0A061FPQ5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Decapping 2 isoform 1.	0.943
LSM5	LSM1	A0A061DMN8	A0A061GBQ5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.992
LSM5	LSM1-2	A0A061DMN8	A0A061GLG0	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.992