STRINGSTRING
TCM_008184 TCM_008184 TCM_020973 TCM_020973 TCM_026109 TCM_026109 TCM_025921 TCM_025921 LSM1 LSM1 TCM_029584 TCM_029584 TCM_029849 TCM_029849 LSM1-2 LSM1-2 ABH1 ABH1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_008184CAP-binding protein 20 isoform 1. (309 aa)
TCM_020973Eukaryotic initiation factor 4E protein; Belongs to the eukaryotic initiation factor 4E family. (206 aa)
TCM_026109Transcription activators isoform 1. (1334 aa)
TCM_025921Cap-binding protein isoform 2; Belongs to the eukaryotic initiation factor 4E family. (278 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
TCM_029584Eukaryotic translation initiation factor 4E-1 isoform 2; Belongs to the eukaryotic initiation factor 4E family. (234 aa)
TCM_029849Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (580 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
ABH1ARM repeat superfamily protein isoform 1. (864 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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