36 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	TCM_001299	Ribosomal RNA processing 4. (319 aa)
	TCM_001697	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (688 aa)
	TCM_002348	Uncharacterized protein. (108 aa)
	TCM_005003	Ribosomal RNA processing Brix domain protein isoform 1. (354 aa)
	TCM_002457	Uncharacterized protein isoform 1. (400 aa)
	TCM_006860	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (849 aa)
	TCM_011364	3'-5' exonuclease, putative. (959 aa)
	TCM_017010	RNA-binding family protein isoform 1. (305 aa)
	TCM_018752	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (436 aa)
	TCM_016956	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (599 aa)
	TCM_024636	3'-5'-exoribonuclease family protein. (302 aa)
	TCM_025138	KRR1 family protein, putative isoform 1. (685 aa)
	TCM_025463	3'-5'-exoribonuclease family protein isoform 1. (453 aa)
	TCM_025856	Polynucleotidyl transferase, putative isoform 1. (920 aa)
	TCM_022929	Ribosomal protein S8e family protein. (338 aa)
	TCM_026648	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (80 aa)
	TCM_030972	Uncharacterized protein isoform 1. (395 aa)
	TCM_032898	Uncharacterized protein. (248 aa)
	TCM_032982	Uncharacterized protein isoform 1. (2614 aa)
	TCM_033469	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (82 aa)
	TCM_031646	Polynucleotidyl transferase, ribonuclease H-like superfamily protein, putative. (332 aa)
	TCM_043261	3'-5'-exoribonuclease family protein isoform 7. (288 aa)
	TCM_044402	Pre-mRNA cleavage complex II protein family isoform 1. (378 aa)
	TCM_044782	Exonuclease domain-containing protein. (414 aa)
	TCM_012223	Protein MAK16 homolog; Belongs to the MAK16 family. (289 aa)
	EIF6-2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	TCM_012055	PNAS-3 related isoform 1. (240 aa)
	TCM_016598	Las1-like family protein, putative isoform 1. (624 aa)
	TCM_027106	RNA helicase, ATP-dependent, SK12/DOB1 protein. (987 aa)
	TCM_029253	Pumilio 23, putative isoform 1. (723 aa)
	TCM_036901	Sas10/Utp3/C1D family. (206 aa)
	TCM_038057	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (335 aa)
	TCM_040771	3'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
	TCM_041809	Scarecrow-like transcription factor 11, putative isoform 1. (176 aa)
	TCM_039723	RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1. (990 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EIF6	EIF6-2	A0A061DF04	A0A061FVM5	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.900
EIF6	TCM_001697	A0A061DF04	A0A061DJH9	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.978
EIF6	TCM_002457	A0A061DF04	A0A061DUA8	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein isoform 1.	0.859
EIF6	TCM_005003	A0A061DF04	A0A061DTW3	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosomal RNA processing Brix domain protein isoform 1.	0.964
EIF6	TCM_006860	A0A061DF04	A0A061DZ41	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.905
EIF6	TCM_011364	A0A061DF04	A0A061E914	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	3'-5' exonuclease, putative.	0.443
EIF6	TCM_012223	A0A061DF04	A0A061FUX3	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.917
EIF6	TCM_016598	A0A061DF04	A0A061G6N6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Las1-like family protein, putative isoform 1.	0.550
EIF6	TCM_016956	A0A061DF04	A0A061EJL2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.964
EIF6	TCM_018752	A0A061DF04	A0A061EFC2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.970
EIF6	TCM_022929	A0A061DF04	A0A061F1S6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosomal protein S8e family protein.	0.948
EIF6	TCM_025856	A0A061DF04	A0A061EZH4	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Polynucleotidyl transferase, putative isoform 1.	0.443
EIF6	TCM_027106	A0A061DF04	A0A061G9B8	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	RNA helicase, ATP-dependent, SK12/DOB1 protein.	0.485
EIF6	TCM_036901	A0A061DF04	A0A061GIF8	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Sas10/Utp3/C1D family.	0.584
EIF6	TCM_038057	A0A061DF04	A0A061GNP3	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.785
EIF6	TCM_039723	A0A061DF04	A0A061GYG9	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1.	0.485
EIF6-2	EIF6	A0A061FVM5	A0A061DF04	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.900
EIF6-2	TCM_001697	A0A061FVM5	A0A061DJH9	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.978
EIF6-2	TCM_002457	A0A061FVM5	A0A061DUA8	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Uncharacterized protein isoform 1.	0.859
EIF6-2	TCM_005003	A0A061FVM5	A0A061DTW3	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	Ribosomal RNA processing Brix domain protein isoform 1.	0.964