STRINGSTRING
TCM_005611 TCM_005611 TCM_041933 TCM_041933 TCM_042031 TCM_042031 TCM_041752 TCM_041752 TCM_041300 TCM_041300 TCM_041365 TCM_041365 TCM_041372 TCM_041372 TCM_040914 TCM_040914 TCM_040506 TCM_040506 TCM_037083 TCM_037083 TCM_030472 TCM_030472 LSM1-2 LSM1-2 TCM_027417 TCM_027417 LSM1 LSM1 TCM_027418 TCM_027418 TCM_027415 TCM_027415 TCM_016705 TCM_016705 TCM_015799 TCM_015799 TCM_015661 TCM_015661 TCM_015354 TCM_015354 TCM_014910 TCM_014910 TCM_014786 TCM_014786 TCM_012240 TCM_012240 LSM3 LSM3 TCM_043331 TCM_043331 TCM_043141 TCM_043141 TCM_042737 TCM_042737 TCM_035065 TCM_035065 TCM_035648 TCM_035648 TCM_032439 TCM_032439 TCM_034020 TCM_034020 TCM_030550 TCM_030550 TCM_032442 TCM_032442 TCM_026258 TCM_026258 TCM_026410 TCM_026410 TCM_026449 TCM_026449 TCM_022844 TCM_022844 TCM_022706 TCM_022706 TCM_019522 TCM_019522 TCM_021241 TCM_021241 TCM_019826 TCM_019826 TCM_018589 TCM_018589 TCM_011884 TCM_011884 TCM_006895 TCM_006895 TCM_005467 TCM_005467 TCM_004326 TCM_004326 TCM_006385 TCM_006385 TCM_005373 TCM_005373 LSM4 LSM4 LSM5 LSM5 TCM_002009 TCM_002009 TCM_002114 TCM_002114 TCM_001258 TCM_001258 TCM_000216 TCM_000216
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_005611Ccr4-not transcription complex, putative isoform 1. (2413 aa)
TCM_041933NOT2 / NOT3 / NOT5 family isoform 1. (664 aa)
TCM_042031Lupus la ribonucleoprotein, putative isoform 3. (893 aa)
TCM_041752DNA-directed RNA polymerase II isoform 1. (176 aa)
TCM_041300Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (280 aa)
TCM_041365Uncharacterized protein. (208 aa)
TCM_041372F-box and associated interaction domains-containing protein. (109 aa)
TCM_040914Smg-7, putative isoform 1. (989 aa)
TCM_040506Cell differentiation, Rcd1-like protein isoform 4. (322 aa)
TCM_037083Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (274 aa)
TCM_030472Transducin/WD40 repeat-like superfamily protein, putative isoform 1. (1420 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
TCM_027417CCR4-associated factor 1. (356 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
TCM_027418Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
TCM_027415Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
TCM_016705Decapping 5-like, putative isoform 1. (574 aa)
TCM_015799Regulator of nonsense transcripts 1. (1266 aa)
TCM_015661F-box domain-containing protein. (422 aa)
TCM_015354Polypyrimidine tract-binding protein isoform 1. (463 aa)
TCM_014910Ccr4-not transcription complex, putative. (2253 aa)
TCM_014786Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (995 aa)
TCM_012240Binding-like protein isoform 1. (723 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
TCM_043331Polynucleotidyl transferase, putative. (252 aa)
TCM_043141Decapping 2 isoform 1. (321 aa)
TCM_042737Zinc finger protein, putative. (482 aa)
TCM_035065DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
TCM_035648Polypyrimidine tract-binding protein 3. (718 aa)
TCM_032439Topoisomerase II-associated protein PAT1, putative. (841 aa)
TCM_034020PERQ amino acid-rich with GYF domain-containing protein 2, putative isoform 1. (1828 aa)
TCM_030550Transducin/WD40 repeat-like superfamily protein, putative isoform 1. (1390 aa)
TCM_032442Uncharacterized protein. (512 aa)
TCM_026258F-box associated ubiquitination effector family protein, putative. (410 aa)
TCM_0264105'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (990 aa)
TCM_026449Transcription regulator NOT2/NOT3/NOT5 family protein. (904 aa)
TCM_022844Polynucleotidyl transferase. (285 aa)
TCM_022706mRNA-decapping enzyme-like protein. (376 aa)
TCM_019522Decapping 5, putative isoform 2. (601 aa)
TCM_021241Uncharacterized protein isoform 1. (145 aa)
TCM_019826Small nuclear ribonucleoprotein family protein isoform 1. (91 aa)
TCM_018589Polypyrimidine tract-binding protein 1 isoform 1. (466 aa)
TCM_011884Decapping 5. (673 aa)
TCM_006895Polynucleotidyl transferase, putative. (205 aa)
TCM_005467Nucleotidyltransferase family protein isoform 1. (722 aa)
TCM_004326Uncharacterized protein isoform 1. (287 aa)
TCM_006385Oxidoreductase, putative. (455 aa)
TCM_005373RNAhelicase-like 8 isoform 1; Belongs to the DEAD box helicase family. (501 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
TCM_002009Topoisomerase II-associated protein PAT1, putative isoform 1. (798 aa)
TCM_002114Cell differentiation, Rcd1-like protein, putative. (324 aa)
TCM_001258RNA polymerase II, Rpb4, core protein isoform 1. (138 aa)
TCM_0002162-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein isoform 1. (517 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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