STRINGSTRING
TCM_001299 TCM_001299 TCM_001258 TCM_001258 TCM_001534 TCM_001534 TCM_001607 TCM_001607 TCM_002009 TCM_002009 TCM_002348 TCM_002348 LSM5 LSM5 LSM4 LSM4 TCM_005611 TCM_005611 TCM_005726 TCM_005726 TCM_006420 TCM_006420 TCM_006421 TCM_006421 TCM_006150 TCM_006150 TCM_005208 TCM_005208 TCM_005467 TCM_005467 TCM_006895 TCM_006895 TCM_011364 TCM_011364 TCM_007746 TCM_007746 TCM_011884 TCM_011884 TCM_019826 TCM_019826 TCM_016908 TCM_016908 TCM_019522 TCM_019522 TCM_021458 TCM_021458 TCM_022360 TCM_022360 TCM_022706 TCM_022706 TCM_024636 TCM_024636 TCM_025463 TCM_025463 TCM_025327 TCM_025327 TCM_025856 TCM_025856 TCM_022844 TCM_022844 TCM_026449 TCM_026449 TCM_026410 TCM_026410 TCM_024996 TCM_024996 TCM_030972 TCM_030972 TCM_031736 TCM_031736 TCM_026258 TCM_026258 TCM_032442 TCM_032442 TCM_033542 TCM_033542 TCM_034205 TCM_034205 TCM_034910 TCM_034910 TCM_032439 TCM_032439 TCM_035065 TCM_035065 TCM_035855 TCM_035855 TCM_043050 TCM_043050 TCM_034795 TCM_034795 TCM_043261 TCM_043261 TCM_043141 TCM_043141 TCM_043331 TCM_043331 LSM3 LSM3 TCM_012240 TCM_012240 TCM_012168 TCM_012168 TCM_012652 TCM_012652 TCM_014910 TCM_014910 TCM_012055 TCM_012055 TCM_015799 TCM_015799 TCM_015825 TCM_015825 TCM_015830 TCM_015830 TCM_015822 TCM_015822 TCM_016705 TCM_016705 TCM_027415 TCM_027415 TCM_027418 TCM_027418 TCM_028633 TCM_028633 TCM_028841 TCM_028841 LSM1 LSM1 TCM_029008 TCM_029008 TCM_029844 TCM_029844 TCM_029910 TCM_029910 TCM_027417 TCM_027417 TCM_037188 TCM_037188 LSM1-2 LSM1-2 TCM_037921 TCM_037921 TCM_037083 TCM_037083 TCM_040914 TCM_040914 TCM_040771 TCM_040771 TCM_040864 TCM_040864 ABH1 ABH1 TCM_041300 TCM_041300 TCM_041589 TCM_041589 TCM_041752 TCM_041752 TCM_042083 TCM_042083 TCM_041685 TCM_041685 TCM_041933 TCM_041933
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_001299Ribosomal RNA processing 4. (319 aa)
TCM_001258RNA polymerase II, Rpb4, core protein isoform 1. (138 aa)
TCM_001534Uncharacterized protein isoform 1. (395 aa)
TCM_001607Eukaryotic release factor 1 (ERF1) family protein. (116 aa)
TCM_002009Topoisomerase II-associated protein PAT1, putative isoform 1. (798 aa)
TCM_002348Uncharacterized protein. (108 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
TCM_005611Ccr4-not transcription complex, putative isoform 1. (2413 aa)
TCM_005726Mago nashi family protein. (151 aa)
TCM_006420Partner of Y14-MAGO isoform 1. (232 aa)
TCM_006421Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (229 aa)
TCM_006150Smg-4/UPF3 family protein, putative isoform 1. (514 aa)
TCM_0052083'-5'-exoribonuclease family protein isoform 1. (316 aa)
TCM_005467Nucleotidyltransferase family protein isoform 1. (722 aa)
TCM_006895Polynucleotidyl transferase, putative. (205 aa)
TCM_0113643'-5' exonuclease, putative. (959 aa)
TCM_007746Eukaryotic initiation factor 4A-III isoform 1. (406 aa)
TCM_011884Decapping 5. (673 aa)
TCM_019826Small nuclear ribonucleoprotein family protein isoform 1. (91 aa)
TCM_016908DEAD-box ATP-dependent RNA helicase 46 isoform 2; Belongs to the DEAD box helicase family. (772 aa)
TCM_019522Decapping 5, putative isoform 2. (601 aa)
TCM_021458DEAD box RNA helicase family protein isoform 2. (1158 aa)
TCM_022360Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (370 aa)
TCM_022706mRNA-decapping enzyme-like protein. (376 aa)
TCM_0246363'-5'-exoribonuclease family protein. (302 aa)
TCM_0254633'-5'-exoribonuclease family protein isoform 1. (453 aa)
TCM_025327Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (377 aa)
TCM_025856Polynucleotidyl transferase, putative isoform 1. (920 aa)
TCM_022844Polynucleotidyl transferase. (285 aa)
TCM_026449Transcription regulator NOT2/NOT3/NOT5 family protein. (904 aa)
TCM_0264105'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (990 aa)
TCM_024996DNAse I-like superfamily protein isoform 1. (602 aa)
TCM_030972Uncharacterized protein isoform 1. (395 aa)
TCM_031736JHL23J11.4 protein isoform 1. (470 aa)
TCM_026258F-box associated ubiquitination effector family protein, putative. (410 aa)
TCM_032442Uncharacterized protein. (512 aa)
TCM_0335425'-3' exoribonuclease 3. (364 aa)
TCM_0342055'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (1110 aa)
TCM_034910Carbon catabolite repressor protein 4, putative isoform 1. (584 aa)
TCM_032439Topoisomerase II-associated protein PAT1, putative. (841 aa)
TCM_035065DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
TCM_035855Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (644 aa)
TCM_043050Regulator of nonsense transcripts 2 isoform 1. (1193 aa)
TCM_034795Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1. (1194 aa)
TCM_0432613'-5'-exoribonuclease family protein isoform 7. (288 aa)
TCM_043141Decapping 2 isoform 1. (321 aa)
TCM_043331Polynucleotidyl transferase, putative. (252 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
TCM_012240Binding-like protein isoform 1. (723 aa)
TCM_012168P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1; Belongs to the DEAD box helicase family. (626 aa)
TCM_0126525'-3' exoribonuclease 3. (189 aa)
TCM_014910Ccr4-not transcription complex, putative. (2253 aa)
TCM_012055PNAS-3 related isoform 1. (240 aa)
TCM_015799Regulator of nonsense transcripts 1. (1266 aa)
TCM_015825Glycine-rich-like protein. (369 aa)
TCM_015830Uncharacterized protein. (223 aa)
TCM_015822Glycine-rich protein isoform 1. (518 aa)
TCM_016705Decapping 5-like, putative isoform 1. (574 aa)
TCM_027415Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
TCM_027418Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
TCM_028633CASC3/Barentsz eIF4AIII binding, putative isoform 1. (711 aa)
TCM_028841Smg-4/UPF3 family protein, putative isoform 1. (523 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
TCM_029008DEA(D/H)-box RNA helicase family protein; Belongs to the DEAD box helicase family. (505 aa)
TCM_029844Telomerase activating protein Est1, putative. (1017 aa)
TCM_029910C-terminal domain phosphatase-like 1 isoform 2. (984 aa)
TCM_027417CCR4-associated factor 1. (356 aa)
TCM_037188Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
TCM_037921Uncharacterized protein isoform 1. (715 aa)
TCM_037083Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (274 aa)
TCM_040914Smg-7, putative isoform 1. (989 aa)
TCM_0407713'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
TCM_040864RNA-binding family protein. (199 aa)
ABH1ARM repeat superfamily protein isoform 1. (864 aa)
TCM_041300Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (280 aa)
TCM_041589Uncharacterized protein isoform 1. (1219 aa)
TCM_041752DNA-directed RNA polymerase II isoform 1. (176 aa)
TCM_0420833'-5'-exoribonuclease family protein isoform 1. (256 aa)
TCM_041685RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1. (1441 aa)
TCM_041933NOT2 / NOT3 / NOT5 family isoform 1. (664 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.