STRINGSTRING
TCM_028829 TCM_028829 TCM_016474 TCM_016474 TCM_029559 TCM_029559 TCM_029408 TCM_029408 TCM_029904 TCM_029904 TCM_036757 TCM_036757 TCM_036753 TCM_036753 TCM_028922 TCM_028922 TCM_037188 TCM_037188 TCM_030202 TCM_030202 TCM_038426 TCM_038426 TCM_039820 TCM_039820 TCM_039334 TCM_039334 TCM_040677 TCM_040677 TCM_041743 TCM_041743 TCM_041752 TCM_041752 TCM_027764 TCM_027764 TCM_014160 TCM_014160 TCM_044847 TCM_044847 TCM_014123 TCM_014123 TCM_043373 TCM_043373 TCM_044852 TCM_044852 TCM_044843 TCM_044843 TCM_043260 TCM_043260 TCM_035855 TCM_035855 TCM_034654 TCM_034654 TCM_031380 TCM_031380 TCM_034374 TCM_034374 TCM_030913 TCM_030913 TCM_033896 TCM_033896 TCM_026832 TCM_026832 TCM_025856 TCM_025856 TCM_020947 TCM_020947 TCM_021362 TCM_021362 TCM_020711 TCM_020711 TCM_020635 TCM_020635 TCM_020785 TCM_020785 TCM_020236 TCM_020236 TCM_011796 TCM_011796 TCM_011364 TCM_011364 TCM_007024 TCM_007024 TCM_007468 TCM_007468 TCM_006612 TCM_006612 TCM_005903 TCM_005903 TCM_004387 TCM_004387 TCM_001875 TCM_001875 TCM_000427 TCM_000427
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_028829Emb:CAB51178.1, putative. (226 aa)
TCM_016474Uncharacterized protein isoform 1. (216 aa)
TCM_029559Carbohydrate-binding X8 domain superfamily protein, putative. (292 aa)
TCM_029408Plastid transcriptionally active 12 isoform 2. (528 aa)
TCM_029904Aluminum induced protein with YGL and LRDR motifs. (255 aa)
TCM_036757Endonuclease V family protein, putative isoform 1. (269 aa)
TCM_036753RRM domain-containing protein. (78 aa)
TCM_028922Poly(A) binding protein 6, putative isoform 3. (625 aa)
TCM_037188Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
TCM_030202RNA-binding family protein. (421 aa)
TCM_038426Uncharacterized protein isoform 2. (557 aa)
TCM_039820RNA-binding family protein, putative isoform 1. (675 aa)
TCM_039334Pumilio 5, putative isoform 3. (1029 aa)
TCM_040677RNA-binding family protein isoform 1. (455 aa)
TCM_041743Pentatricopeptide repeat superfamily protein. (287 aa)
TCM_041752DNA-directed RNA polymerase II isoform 1. (176 aa)
TCM_027764Pumilio, putative isoform 1. (1005 aa)
TCM_014160Endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain, putative. (431 aa)
TCM_044847RNA polymerase Rpb7-like, N-terminal domain. (176 aa)
TCM_014123Uncharacterized protein isoform 1. (360 aa)
TCM_043373Binding to TOMV RNA 1L isoform 2. (334 aa)
TCM_044852RNA polymerase Rpb7-like, N-terminal domain. (176 aa)
TCM_044843RNA polymerase Rpb7-like, N-terminal domain isoform 1. (176 aa)
TCM_043260Splicing factor U2af large subunit A isoform 4. (596 aa)
TCM_035855Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (644 aa)
TCM_034654RNA-binding family protein, putative. (401 aa)
TCM_031380Aluminum induced protein with YGL and LRDR motifs. (254 aa)
TCM_034374Pentatricopeptide repeat (PPR-like) superfamily protein isoform 1. (703 aa)
TCM_030913RNA-binding family protein. (417 aa)
TCM_033896RNA-binding protein 47C isoform 3. (436 aa)
TCM_026832O-Glycosyl hydrolases family 17 protein, putative isoform 1; Belongs to the glycosyl hydrolase 17 family. (612 aa)
TCM_025856Polynucleotidyl transferase, putative isoform 1. (920 aa)
TCM_020947Splicing factor U2AF 50 kDa subunit, putative. (1032 aa)
TCM_021362High chlorophyll fluorescent 107 isoform 1. (654 aa)
TCM_020711Aluminum induced protein with YGL and LRDR motifs isoform 1. (251 aa)
TCM_020635Pentatricopeptide repeat (PPR) superfamily protein isoform 1. (684 aa)
TCM_020785DNA-directed RNA polymerase II subunit RPB7, putative isoform 1. (190 aa)
TCM_020236Glycine-rich RNA-binding protein 4 isoform 2. (156 aa)
TCM_011796Zinc knuckle family protein. (417 aa)
TCM_0113643'-5' exonuclease, putative. (959 aa)
TCM_007024RNA-binding protein 47A. (436 aa)
TCM_007468RRM domain-containing protein. (136 aa)
TCM_006612Glycerate dehydrogenase isoform 1; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (386 aa)
TCM_005903RNA binding family protein, putative. (743 aa)
TCM_004387Chloroplast stem-loop binding protein of 41 kDa isoform 1. (400 aa)
TCM_001875Carbohydrate-binding X8 domain superfamily protein, putative isoform 1. (234 aa)
TCM_000427U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (585 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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