STRINGSTRING
TCM_021956 TCM_021956 TCM_046359 TCM_046359 TCM_040699 TCM_040699 TCM_042222 TCM_042222 TCM_041622 TCM_041622 TCM_041779 TCM_041779 TCM_038425 TCM_038425 TCM_041291 TCM_041291 TCM_041171 TCM_041171 GTF2H2 GTF2H2 TCM_040712 TCM_040712 TCM_040342 TCM_040342 TCM_040036 TCM_040036 TCM_036918 TCM_036918 TCM_038519 TCM_038519 TCM_038145 TCM_038145 TCM_030446 TCM_030446 TCM_030350 TCM_030350 TCM_029896 TCM_029896 TCM_038046 TCM_038046 TCM_037576 TCM_037576 TCM_029140 TCM_029140 TCM_036855 TCM_036855 TCM_030438 TCM_030438 TCM_029852 TCM_029852 TCM_029297 TCM_029297 TCM_029120 TCM_029120 TCM_015468 TCM_015468 TCM_027598 TCM_027598 TCM_028940 TCM_028940 TCM_029358 TCM_029358 TCM_016212 TCM_016212 TCM_029118 TCM_029118 TCM_029080 TCM_029080 TCM_002056 TCM_002056 TCM_002259 TCM_002259 TCM_002532 TCM_002532 TCM_002902 TCM_002902 TCM_004576 TCM_004576 TCM_002410 TCM_002410 TCM_005132 TCM_005132 TCM_005875 TCM_005875 TCM_005945 TCM_005945 TCM_005271 TCM_005271 TCM_006919 TCM_006919 TCM_006252 TCM_006252 TCM_006456 TCM_006456 TCM_011016 TCM_011016 TCM_011713 TCM_011713 TCM_011854 TCM_011854 TCM_019538 TCM_019538 TCM_011889 TCM_011889 TCM_020238 TCM_020238 TCM_017926 TCM_017926 TCM_018699 TCM_018699 TCM_018814 TCM_018814 TCM_021168 TCM_021168 TCM_019910 TCM_019910 TCM_022212 TCM_022212 TCM_022083 TCM_022083 TCM_022853 TCM_022853 TCM_022984 TCM_022984 TCM_021185 TCM_021185 TCM_024315 TCM_024315 TCM_024732 TCM_024732 TCM_025030 TCM_025030 MED4 MED4 TCM_022240 TCM_022240 TCM_025810 TCM_025810 TCM_022533 TCM_022533 TCM_026625 TCM_026625 TCM_026345 TCM_026345 TCM_026629 TCM_026629 TCM_026624 TCM_026624 TCM_030768 TCM_030768 TCM_030648 TCM_030648 TCM_031384 TCM_031384 TCM_031675 TCM_031675 TCM_031680 TCM_031680 TCM_031683 TCM_031683 TCM_031682 TCM_031682 TCM_030636 TCM_030636 TCM_001531 TCM_001531 TCM_001543 TCM_001543 TCM_001045 TCM_001045 TCM_001077 TCM_001077 TCM_000997 TCM_000997 TCM_034139 TCM_034139 TCM_046883 TCM_046883 TCM_046885 TCM_046885 TCM_034392 TCM_034392 TCM_034542 TCM_034542 TCM_034730 TCM_034730 TCM_035096 TCM_035096 TCM_033027 TCM_033027 TCM_036070 TCM_036070 TCM_036592 TCM_036592 TCM_042505 TCM_042505 TCM_036559 TCM_036559 TCM_043066 TCM_043066 TCM_043099 TCM_043099 TCM_042475 TCM_042475 TCM_011973 TCM_011973 TCM_045516 TCM_045516 TCM_011971 TCM_011971 TCM_012249 TCM_012249 TCM_012560 TCM_012560 TCM_044781 TCM_044781 TCM_014479 TCM_014479 TCM_015033 TCM_015033 TCM_014808 TCM_014808 TCM_015034 TCM_015034 TCM_015035 TCM_015035 TCM_015503 TCM_015503 TCM_016134 TCM_016134 TCM_016133 TCM_016133 TCM_016301 TCM_016301 TCM_016493 TCM_016493 TCM_026909 TCM_026909 TCM_029103 TCM_029103
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_021956Transcription factor DP isoform 1; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family. (290 aa)
TCM_046359Uncharacterized protein. (237 aa)
TCM_040699Basic helix-loop-helix (BHLH) DNA-binding superfamily protein. (250 aa)
TCM_042222Uncharacterized protein. (172 aa)
TCM_041622Elf4 domain-containing protein. (77 aa)
TCM_041779Transcription initiation factor IIA subunit 1. (393 aa)
TCM_038425Tetratricopeptide repeat (TPR)-like superfamily protein. (916 aa)
TCM_041291Transcription factor E2F isoform 2. (497 aa)
TCM_041171annotation not available (646 aa)
GTF2H2General transcription factor IIH subunit. (420 aa)
TCM_040712Nuclear transcription factor Y subunit A-9, putative. (315 aa)
TCM_040342Transcription initiation factor TFIID subunit 11 isoform 1. (225 aa)
TCM_040036TBP-associated factor 7 isoform 5. (210 aa)
TCM_036918TBP-associated factor 5 isoform 1. (701 aa)
TCM_038519Gag_pre-integrs domain-containing protein. (151 aa)
TCM_038145Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein, putative. (287 aa)
TCM_030446Nuclear transcription factor Y subunit B-6. (231 aa)
TCM_030350Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (549 aa)
TCM_029896RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (451 aa)
TCM_038046RNA polymerase II transcription mediators isoform 1. (663 aa)
TCM_037576Nuclear transcription factor Y subunit A-3, putative isoform 1. (342 aa)
TCM_029140TATA binding protein associated factor 21kDa subunit isoform 1. (206 aa)
TCM_036855Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (136 aa)
TCM_030438Nuclear transcription factor Y subunit B-3. (216 aa)
TCM_029852Basic helix-loop-helix DNA-binding superfamily protein. (226 aa)
TCM_029297Uncharacterized protein isoform 1. (196 aa)
TCM_029120Transcription initiation factor TFIID subunit A isoform 4. (672 aa)
TCM_015468General transcription factor 3C polypeptide 5, putative isoform 1. (630 aa)
TCM_027598Histone acetyltransferase of the CBP family 12 isoform 1. (1751 aa)
TCM_028940RNA polymerase transcriptional regulation mediator-related isoform 1. (257 aa)
TCM_029358Bromodomain transcription factor, putative. (269 aa)
TCM_016212Transcription initiation factor IIE subunit beta. (284 aa)
TCM_029118B-block binding subunit of TFIIIC, putative isoform 1. (1845 aa)
TCM_029080B-block binding subunit of TFIIIC, putative. (1556 aa)
TCM_002056General transcription factor IIE subunit 1 isoform 2. (480 aa)
TCM_002259Tata box associated factor ii 59. (540 aa)
TCM_002532Homeodomain-like transcriptional regulator isoform 1. (1164 aa)
TCM_002902DNA binding protein, putative isoform 1. (868 aa)
TCM_004576Nuclear transcription factor Y subunit B-5. (175 aa)
TCM_002410Nuclear transcription factor Y subunit B-3. (214 aa)
TCM_005132Zinc knuckle family protein, putative isoform 1. (612 aa)
TCM_005875Nuclear transcription factor Y subunit A-1, putative isoform 1. (343 aa)
TCM_005945Hydroxyproline-rich glycoprotein family protein, putative isoform 1. (277 aa)
TCM_005271TBP-associated factor 4-like protein. (1015 aa)
TCM_006919Basic helix-loop-helix DNA-binding superfamily protein, putative. (160 aa)
TCM_006252Zinc finger family protein isoform 1. (371 aa)
TCM_006456Integral membrane protein hemolysin-III, putative isoform 1. (294 aa)
TCM_011016WD repeat-containing protein 42A isoform 1. (1606 aa)
TCM_011713Maternal effect embryo arrest 12, putative. (734 aa)
TCM_011854Phytochrome and flowering time regulatory protein isoform 1. (871 aa)
TCM_019538Histone acetyltransferase of the CBP family 1, putative. (1461 aa)
TCM_011889Uncharacterized protein. (261 aa)
TCM_020238Electron transport complex protein rnfC, putative isoform 1. (539 aa)
TCM_017926DP-E2F-like 1, putative. (554 aa)
TCM_018699Uncharacterized protein. (181 aa)
TCM_018814Bromodomain transcription factor, putative isoform 1. (342 aa)
TCM_021168Always early, putative isoform 2. (1186 aa)
TCM_019910Histone acetyltransferase, putative. (1899 aa)
TCM_022212TBP-associated factor 8, putative. (373 aa)
TCM_022083Nuclear transcription factor Y subunit B-10 isoform 1. (235 aa)
TCM_022853E2F transcription factor 3 isoform 1. (480 aa)
TCM_022984Nuclear transcription factor Y subunit A-10, putative. (328 aa)
TCM_021185Nuclear transcription factor Y subunit B-5. (166 aa)
TCM_024315Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1. (233 aa)
TCM_024732Nuclear factor Y, putative. (361 aa)
TCM_025030Mediator of RNA polymerase II transcription subunit 7; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. (173 aa)
MED4Mediator of RNA polymerase II transcription subunit 4; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (417 aa)
TCM_022240Transcription factor DP. (285 aa)
TCM_025810Cyclin/Brf1-like TBP-binding protein, putative isoform 1. (605 aa)
TCM_022533Transcription initiation factor TFIID subunit 12, putative isoform 4. (603 aa)
TCM_026625Cyclin-H1-1 isoform 1; Belongs to the cyclin family. (426 aa)
TCM_026345Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1813 aa)
TCM_026629Nuclear transcription factor Y subunit B-4. (144 aa)
TCM_026624DIRP,Myb-like DNA-binding domain, putative isoform 2. (1169 aa)
TCM_030768Transcription initiation factor tfiid, putative. (535 aa)
TCM_030648Nuclear transcription factor Y subunit B-3. (279 aa)
TCM_031384Transcription factor TFIIIC, putative isoform 1. (142 aa)
TCM_031675Uncharacterized protein isoform 1. (156 aa)
TCM_031680Uncharacterized protein. (423 aa)
TCM_031683Uncharacterized protein. (180 aa)
TCM_031682Uncharacterized protein. (534 aa)
TCM_030636Ccaat-binding transcription factor subunit A, putative. (228 aa)
TCM_001531Nuclear transcription factor Y subunit B-7. (277 aa)
TCM_001543SsDNA-binding transcriptional regulator isoform 2. (111 aa)
TCM_001045Cak assembly factor, putative. (191 aa)
TCM_001077Mediator of RNA polymerase II transcription subunit 18. (217 aa)
TCM_000997Basic helix-loop-helix DNA-binding superfamily protein, putative. (224 aa)
TCM_034139JHL18I08.10 protein isoform 2. (260 aa)
TCM_046883Winged-helix DNA-binding transcription factor family protein, putative. (208 aa)
TCM_046885Winged-helix DNA-binding transcription factor family protein, putative. (425 aa)
TCM_034392Homeodomain superfamily protein isoform 1. (771 aa)
TCM_034542Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (106 aa)
TCM_034730TBP-associated factor 4, putative isoform 1. (950 aa)
TCM_035096Basal transcription factor complex subunit-related isoform 1. (296 aa)
TCM_033027Homeodomain superfamily protein. (321 aa)
TCM_036070Tetratricopeptide repeat-containing protein, putative isoform 1. (923 aa)
TCM_036592snRNA-activating protein complex subunit 3 isoform 1. (467 aa)
TCM_042505Elf4 domain-containing protein. (114 aa)
TCM_036559Uncharacterized protein. (157 aa)
TCM_043066Nuclear transcription factor Y subunit B-10 isoform 1. (179 aa)
TCM_043099Transcription initiation factor IIF isoform 2. (263 aa)
TCM_042475Basic helix-loop-helix DNA-binding superfamily protein, putative. (258 aa)
TCM_011973DP-E2F-like 1. (180 aa)
TCM_045516Uncharacterized protein isoform 1. (601 aa)
TCM_011971DP-E2F-like 1 isoform 1. (388 aa)
TCM_012249TBP-associated factor 2. (1349 aa)
TCM_012560Cyclin-dependent kinase D1,3 isoform 2; Belongs to the protein kinase superfamily. (435 aa)
TCM_044781Retinoblastoma-related 1. (1011 aa)
TCM_014479Dr1. (249 aa)
TCM_015033Basic helix-loop-helix DNA-binding superfamily protein, putative. (275 aa)
TCM_014808Mediator of RNA polymerase II transcription subunit 31; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (211 aa)
TCM_015034Basic helix-loop-helix DNA-binding superfamily protein, putative. (256 aa)
TCM_015035Basic helix-loop-helix DNA-binding superfamily protein, putative. (243 aa)
TCM_015503Transducin/WD40 repeat-like superfamily protein, putative. (914 aa)
TCM_016134Basic helix-loop-helix DNA-binding superfamily protein, putative. (259 aa)
TCM_016133Basic helix-loop-helix DNA-binding superfamily protein, putative. (254 aa)
TCM_016301Xeroderma pigmentosum complementation group B 1 isoform 1. (771 aa)
TCM_016493Transcriptional coactivator p15 (PC4) family protein (KELP). (158 aa)
TCM_026909Nuclear transcription factor Y subunit A-7. (203 aa)
TCM_029103Nuclear transcription factor Y subunit A-3, putative isoform 1. (341 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
Server load: low (20%) [HD]