STRINGSTRING
TCM_000427 TCM_000427 TCM_000407 TCM_000407 TCM_000813 TCM_000813 TCM_001446 TCM_001446 TCM_000936 TCM_000936 TCM_001356 TCM_001356 TCM_001311 TCM_001311 TCM_002768 TCM_002768 TCM_000425 TCM_000425 LSM5 LSM5 TCM_002312 TCM_002312 TCM_003782 TCM_003782 TCM_000798 TCM_000798 TCM_003387 TCM_003387 TCM_003910 TCM_003910 TCM_004856 TCM_004856 TCM_004858 TCM_004858 LSM4 LSM4 TCM_004650 TCM_004650 TCM_002491 TCM_002491 TCM_005615 TCM_005615 TCM_006418 TCM_006418 TCM_004219 TCM_004219 TCM_004356 TCM_004356 TCM_046691 TCM_046691 TCM_006427 TCM_006427 TCM_004673 TCM_004673 TCM_006604 TCM_006604 TCM_004857 TCM_004857 TCM_007017 TCM_007017 TCM_004978 TCM_004978 TCM_005096 TCM_005096 TCM_007486 TCM_007486 TCM_007427 TCM_007427 TCM_005487 TCM_005487 TCM_007259 TCM_007259 TCM_008068 TCM_008068 TCM_007721 TCM_007721 TCM_009497 TCM_009497 TCM_011316 TCM_011316 TCM_010780 TCM_010780 TCM_007746 TCM_007746 TCM_008921 TCM_008921 TCM_011876 TCM_011876 TCM_017030 TCM_017030 TCM_017564 TCM_017564 TCM_017602 TCM_017602 TCM_017709 TCM_017709 TCM_018075 TCM_018075 TCM_017644 TCM_017644 TCM_018339 TCM_018339 TCM_011273 TCM_011273 TCM_019539 TCM_019539 TCM_011517 TCM_011517 TCM_019848 TCM_019848 TCM_019826 TCM_019826 TCM_020136 TCM_020136 TCM_019842 TCM_019842 TCM_020026 TCM_020026 TCM_020255 TCM_020255 TCM_020276 TCM_020276 TCM_020154 TCM_020154 TCM_020801 TCM_020801 TCM_020550 TCM_020550 TCM_020910 TCM_020910 TCM_021228 TCM_021228 TCM_021051 TCM_021051 TCM_020891 TCM_020891 TCM_019401 TCM_019401 TCM_020986 TCM_020986 TCM_021102 TCM_021102 TCM_021554 TCM_021554 TCM_019804 TCM_019804 TCM_022039 TCM_022039 TCM_022100 TCM_022100 TCM_022302 TCM_022302 TCM_022366 TCM_022366 TCM_022702 TCM_022702 TCM_020947 TCM_020947 TCM_022624 TCM_022624 TCM_024757 TCM_024757 TCM_024438 TCM_024438 TCM_025025 TCM_025025 TCM_025128 TCM_025128 TCM_025838 TCM_025838 TCM_025242 TCM_025242 TCM_025638 TCM_025638 TCM_026027 TCM_026027 TCM_026062 TCM_026062 TCM_026519 TCM_026519 TCM_026814 TCM_026814 TCM_026747 TCM_026747 TCM_030581 TCM_030581 TCM_030585 TCM_030585 TCM_026832 TCM_026832 TCM_026841 TCM_026841 LSM8 LSM8 TCM_031427 TCM_031427 TCM_031877 TCM_031877 TCM_031736 TCM_031736 TCM_026195 TCM_026195 TCM_032899 TCM_032899 TCM_026665 TCM_026665 TCM_032398 TCM_032398 TCM_033687 TCM_033687 TCM_034192 TCM_034192 TCM_034385 TCM_034385 TCM_034659 TCM_034659 TCM_036321 TCM_036321 TCM_035719 TCM_035719 TCM_035735 TCM_035735 TCM_036535 TCM_036535 TCM_036503 TCM_036503 TCM_036573 TCM_036573 TCM_034316 TCM_034316 TCM_042751 TCM_042751 TCM_043024 TCM_043024 TCM_043295 TCM_043295 TCM_043209 TCM_043209 TCM_043260 TCM_043260 TCM_043293 TCM_043293 LSM3 LSM3 TCM_044716 TCM_044716 TCM_044159 TCM_044159 TCM_045455 TCM_045455 TCM_013623 TCM_013623 TCM_043735 TCM_043735 TCM_014015 TCM_014015 TCM_013720 TCM_013720 TCM_014166 TCM_014166 TCM_045030 TCM_045030 TCM_014755 TCM_014755 TCM_047012 TCM_047012 TCM_014974 TCM_014974 TCM_014922 TCM_014922 TCM_015504 TCM_015504 TCM_012831 TCM_012831 TCM_014243 TCM_014243 TCM_015872 TCM_015872 TCM_014622 TCM_014622 TCM_016407 TCM_016407 TCM_026981 TCM_026981 TCM_014895 TCM_014895 TCM_027096 TCM_027096 TCM_027104 TCM_027104 TCM_027215 TCM_027215 TCM_026952 TCM_026952 TCM_015090 TCM_015090 TCM_027148 TCM_027148 TCM_015383 TCM_015383 TCM_029561 TCM_029561 TCM_029762 TCM_029762 TCM_027063 TCM_027063 TCM_027137 TCM_027137 TCM_027212 TCM_027212 TCM_030335 TCM_030335 TCM_027427 TCM_027427 TCM_029917 TCM_029917 TCM_036983 TCM_036983 TCM_037016 TCM_037016 TCM_037328 TCM_037328 TCM_037653 TCM_037653 TCM_037829 TCM_037829 TCM_038062 TCM_038062 TCM_029973 TCM_029973 TCM_038810 TCM_038810 TCM_038277 TCM_038277 TCM_040215 TCM_040215 TCM_040038 TCM_040038 TCM_040224 TCM_040224 TCM_040897 TCM_040897 TCM_041395 TCM_041395 TCM_041474 TCM_041474 TCM_041484 TCM_041484 TCM_041636 TCM_041636 TCM_041518 TCM_041518 TCM_041599 TCM_041599 TCM_041684 TCM_041684 TCM_041778 TCM_041778 TCM_038764 TCM_038764 TCM_039217 TCM_039217 TCM_039496 TCM_039496 TCM_041519 TCM_041519 TCM_042243 TCM_042243 TCM_045682 TCM_045682
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_000427U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (585 aa)
TCM_000407U1 small nuclear ribonucleoprotein 70 kDa. (468 aa)
TCM_000813CCCH-type zinc fingerfamily protein with RNA-binding domain. (495 aa)
TCM_001446Tetratricopeptide repeat (TPR)-like superfamily protein, putative. (167 aa)
TCM_000936RRM domain-containing protein. (582 aa)
TCM_001356Pre-mRNA-splicing factor isy-1. (301 aa)
TCM_001311Transducin/WD40 repeat-like superfamily protein isoform 1. (341 aa)
TCM_002768Uncharacterized protein. (149 aa)
TCM_000425RNA-binding family protein isoform 1. (367 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
TCM_002312DGCR14-related. (652 aa)
TCM_003782Uncharacterized protein. (130 aa)
TCM_000798Plant U-box 49 isoform 1. (692 aa)
TCM_003387Uncharacterized protein. (102 aa)
TCM_003910Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1. (815 aa)
TCM_004856Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 3. (746 aa)
TCM_004858Uncharacterized protein. (191 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (149 aa)
TCM_004650RNA-binding family protein isoform 1. (353 aa)
TCM_002491Sm domain-containing protein. (359 aa)
TCM_005615MIF4G domain-containing protein / MA3 domain-containing protein isoform 1. (1011 aa)
TCM_006418SER/ARG-rich protein 34A, putative isoform 1. (285 aa)
TCM_004219Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1. (279 aa)
TCM_004356Splicing factor Prp18 family protein isoform 1. (415 aa)
TCM_046691Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (174 aa)
TCM_006427Protein interaction regulator family protein isoform 1. (427 aa)
TCM_004673Spliceosomal protein U1A. (260 aa)
TCM_006604GCIP-interacting family protein isoform 1. (307 aa)
TCM_004857RNA helicase family protein. (225 aa)
TCM_007017C2H2 and C2HC zinc fingers superfamily protein. (250 aa)
TCM_004978Uncharacterized protein. (289 aa)
TCM_005096RNA-binding family protein isoform 1. (283 aa)
TCM_007486Serine/arginine rich splicing factor, putative isoform 1. (268 aa)
TCM_007427Splicing factor, putative. (1266 aa)
TCM_005487Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)
TCM_007259Pre-mRNA-processing protein 40B, putative. (1025 aa)
TCM_008068Pre-mRNA splicing factor-related. (1033 aa)
TCM_007721mRNA splicing factor isoform 1. (166 aa)
TCM_009497Spliceosomal U5 snRNP-specific 15 kDa protein, putative. (145 aa)
TCM_011316SWAP/surp domain-containing protein / ubiquitin family protein. (818 aa)
TCM_010780RNA helicase family protein isoform 1. (700 aa)
TCM_007746Eukaryotic initiation factor 4A-III isoform 1. (406 aa)
TCM_008921Uncharacterized protein. (111 aa)
TCM_011876Family of Uncharacterized protein function (DUF572). (310 aa)
TCM_017030RNA recognition motif-containing protein isoform 1. (197 aa)
TCM_017564Suppressor of abi3-5 isoform 1. (1069 aa)
TCM_017602ARM repeat superfamily protein isoform 1. (558 aa)
TCM_017709PRP38 family protein isoform 1. (446 aa)
TCM_018075Uncharacterized protein. (194 aa)
TCM_017644Uncharacterized protein. (209 aa)
TCM_018339CCHC-type domain-containing protein. (337 aa)
TCM_011273Small nuclear ribonucleoprotein Sm D2. (107 aa)
TCM_019539Zinc finger CCHC domain-containing protein 8. (595 aa)
TCM_011517RNA helicase family protein isoform 1. (764 aa)
TCM_019848Transducin/WD40 repeat-like superfamily protein isoform 1. (342 aa)
TCM_019826Small nuclear ribonucleoprotein family protein isoform 1. (91 aa)
TCM_020136Ubiquitin carboxyl-terminal hydrolase family protein. (488 aa)
TCM_019842Family of Uncharacterized protein function. (315 aa)
TCM_020026Chromatin protein family. (581 aa)
TCM_020255Zinc finger family protein. (381 aa)
TCM_020276Uncharacterized protein isoform 1. (131 aa)
TCM_020154P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1; Belongs to the DEAD box helicase family. (687 aa)
TCM_020801CwfJ-like family protein, putative isoform 1. (777 aa)
TCM_020550P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1. (477 aa)
TCM_020910Uncharacterized protein. (149 aa)
TCM_021228Pleiotropic regulatory locus 1. (486 aa)
TCM_021051MOS2, putative isoform 1. (465 aa)
TCM_020891Pre-mRNA splicing Prp18-interacting factor isoform 1. (536 aa)
TCM_019401Uncharacterized protein. (167 aa)
TCM_020986MOS4-associated complex 3A. (523 aa)
TCM_021102SC35-like splicing factor 28 isoform 1. (308 aa)
TCM_021554RNA-binding family protein. (338 aa)
TCM_019804CBF1-interacting co-repressor CIR isoform 1. (474 aa)
TCM_022039RNA-binding family protein with retrovirus zinc finger-like domain, putative. (312 aa)
TCM_022100Pre-mRNA splicing factor-related. (116 aa)
TCM_022302Hydroxyproline-rich glycoprotein family protein. (338 aa)
TCM_022366F21M11.16 protein isoform 1. (670 aa)
TCM_022702Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
TCM_020947Splicing factor U2AF 50 kDa subunit, putative. (1032 aa)
TCM_022624Small nuclear ribonucleoprotein G. (80 aa)
TCM_024757DNA-binding protein, putative isoform 1. (648 aa)
TCM_024438Uncharacterized protein. (163 aa)
TCM_025025SC35-like splicing factor 33 isoform 1. (236 aa)
TCM_025128RNA-binding protein Luc7-like 1 isoform 1. (413 aa)
TCM_025838Microfibrillar-associated protein 1. (434 aa)
TCM_025242Aquarius. (1539 aa)
TCM_025638GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain. (859 aa)
TCM_026027RNA-binding family protein isoform 4. (487 aa)
TCM_026062U11/U12 small nuclear ribonucleoprotein 48 kDa protein, putative isoform 1. (740 aa)
TCM_026519Uncharacterized protein isoform 1. (539 aa)
TCM_026814C2H2 and C2HC zinc fingers superfamily protein, putative. (133 aa)
TCM_026747C2H2 and C2HC zinc fingers superfamily protein isoform 1. (202 aa)
TCM_030581WW domain-containing protein, putative isoform 1. (922 aa)
TCM_030585Cwf15 / Cwc15 cell cycle control family protein. (227 aa)
TCM_026832O-Glycosyl hydrolases family 17 protein, putative isoform 1; Belongs to the glycosyl hydrolase 17 family. (612 aa)
TCM_026841D111/G-patch domain-containing protein. (298 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
TCM_031427Zinc finger (CCCH-type/C3HC4-type RING finger) family protein, putative. (322 aa)
TCM_031877mRNA splicing factor, thioredoxin-like U5 snRNP. (151 aa)
TCM_031736JHL23J11.4 protein isoform 1. (470 aa)
TCM_026195Cell division cycle 5 isoform 1. (967 aa)
TCM_032899Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1. (1279 aa)
TCM_026665RNA-binding family protein isoform 1. (314 aa)
TCM_032398PHF5-like protein. (110 aa)
TCM_033687Uncharacterized protein. (127 aa)
TCM_034192Pre-mRNA-splicing factor ATP-dependent RNA helicase isoform 1. (1185 aa)
TCM_034385Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
TCM_034659Pre-mRNA-processing protein 40A isoform 3. (1041 aa)
TCM_036321RNA recognition motif-containing protein, putative. (147 aa)
TCM_035719Uncharacterized protein. (225 aa)
TCM_035735Uncharacterized protein. (143 aa)
TCM_036535Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1. (1168 aa)
TCM_036503Cactus-binding domain, C-terminal, Cactin, central region. (553 aa)
TCM_036573Transducin family protein / WD-40 repeat family protein isoform 2. (513 aa)
TCM_034316Ubiquitin-like superfamily protein isoform 1; Belongs to the GST superfamily. (395 aa)
TCM_042751SC35-like splicing factor 30 isoform 3. (278 aa)
TCM_043024RNA-binding family protein with retrovirus zinc finger-like domain isoform 1. (304 aa)
TCM_043295RNA recognition motif and CCHC-type zinc finger domains containing protein. (257 aa)
TCM_043209Cwf18 isoform 1. (151 aa)
TCM_043260Splicing factor U2af large subunit A isoform 4. (596 aa)
TCM_043293RNA recognition motif and CCHC-type zinc finger domains containing protein. (260 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
TCM_044716DEAD-box ATP-dependent RNA helicase 35 isoform 1. (653 aa)
TCM_044159Uncharacterized protein isoform 1. (749 aa)
TCM_045455Crooked neck protein / cell cycle protein, putative. (387 aa)
TCM_013623Uncharacterized protein. (114 aa)
TCM_043735U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (211 aa)
TCM_014015Cyclophilin71. (84 aa)
TCM_013720Proline-rich family protein isoform 1. (544 aa)
TCM_014166RNA helicase family protein isoform 2. (1055 aa)
TCM_045030U5 small nuclear ribonucleoprotein helicase, putative isoform 1. (2176 aa)
TCM_014755Nucleotide binding protein, putative isoform 2. (541 aa)
TCM_047012Nucleotide-sensitive chloride conductance regulator (ICln) family protein. (234 aa)
TCM_014974Uncharacterized protein. (117 aa)
TCM_014922LUC7 N_terminus domain-containing protein isoform 1. (351 aa)
TCM_015504SER/ARG-rich protein 34A; Belongs to the eukaryotic ribosomal protein P1/P2 family. (424 aa)
TCM_012831Uncharacterized protein. (294 aa)
TCM_014243U5 small nuclear ribonucleoprotein helicase isoform 1. (2099 aa)
TCM_015872G10 family protein. (145 aa)
TCM_014622Uncharacterized protein. (232 aa)
TCM_016407Crooked neck protein / cell cycle protein, putative isoform 1. (701 aa)
TCM_026981Small nuclear ribonucleoprotein associated protein B. (291 aa)
TCM_014895Splicing factor-related. (801 aa)
TCM_027096Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (114 aa)
TCM_027104Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 2. (855 aa)
TCM_027215U11/U12 small nuclear ribonucleoprotein 25 kDa protein, putative. (252 aa)
TCM_026952Splicing factor subunit; Belongs to the SF3B5 family. (87 aa)
TCM_015090Arginine/serine-rich splicing factor 35. (372 aa)
TCM_027148Modifier of snc1,4 isoform 1. (253 aa)
TCM_015383Splicing factor-related. (509 aa)
TCM_029561Tetratricopeptide repeat-like superfamily protein, PRP39-2,PRP39-2, putative. (1166 aa)
TCM_029762RNA helicase family protein isoform 1. (697 aa)
TCM_027063Cactus-binding domain, C-terminal, Cactin, central region. (594 aa)
TCM_027137Zinc ion binding, putative isoform 1. (332 aa)
TCM_027212Pre-mRNA-processing-splicing factor isoform 1. (2354 aa)
TCM_030335Ubiquitin-specific protease family C19-related protein isoform 1. (461 aa)
TCM_027427PRP38 family protein isoform 1. (380 aa)
TCM_029917Proline-rich spliceosome-associated family protein isoform 1. (606 aa)
TCM_036983ATP synthase subunit b' isoform 1. (497 aa)
TCM_037016Concanavalin A-like lectin protein kinase family protein, putative. (638 aa)
TCM_037328Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1. (490 aa)
TCM_037653CwfJ-like family protein / zinc finger (CCCH-type) family protein isoform 1. (654 aa)
TCM_037829Pre-mRNA splicing Prp18-interacting factor, putative. (209 aa)
TCM_038062Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
TCM_029973Tetratricopeptide repeat-like superfamily protein. (1041 aa)
TCM_038810Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
TCM_038277Zinc finger protein, putative isoform 1. (765 aa)
TCM_040215CCHC-type domain-containing protein. (271 aa)
TCM_040038SC35-like splicing factor 33. (269 aa)
TCM_040224Uncharacterized protein. (237 aa)
TCM_040897RNA-binding (RRM/RBD/RNP motifs) family protein. (124 aa)
TCM_041395Ribosomal protein S5/Elongation factor G/III/V family protein. (990 aa)
TCM_041474Peptidylprolyl isomerase domain and WD repeat-containing protein 1 isoform 1. (687 aa)
TCM_041484G10 family protein isoform 1. (145 aa)
TCM_041636RNA recognition motif-containing protein, putative. (385 aa)
TCM_041518Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1. (318 aa)
TCM_041599PHF5-like protein. (110 aa)
TCM_041684RNA-binding family protein isoform 1. (390 aa)
TCM_041778Splicing factor PWI domain-containing protein, putative isoform 1. (943 aa)
TCM_038764Uncharacterized protein. (434 aa)
TCM_039217Small nuclear ribonucleoprotein F. (88 aa)
TCM_039496Transducin/WD40 repeat-like superfamily protein. (627 aa)
TCM_041519Zinc finger C-x8-C-x5-C-x3-H type family protein. (315 aa)
TCM_042243U2 small nuclear ribonucleoprotein B. (232 aa)
TCM_045682CwfJ-like family protein, putative. (210 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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