STRINGSTRING
TCM_003782 TCM_003782 TCM_003387 TCM_003387 TCM_003910 TCM_003910 TCM_002491 TCM_002491 TCM_004356 TCM_004356 TCM_046691 TCM_046691 TCM_007427 TCM_007427 TCM_007259 TCM_007259 TCM_011316 TCM_011316 TCM_008921 TCM_008921 TCM_011876 TCM_011876 TCM_018075 TCM_018075 TCM_017644 TCM_017644 TCM_018339 TCM_018339 TCM_019842 TCM_019842 TCM_020255 TCM_020255 TCM_019401 TCM_019401 TCM_020986 TCM_020986 TCM_019804 TCM_019804 TCM_022302 TCM_022302 TCM_020947 TCM_020947 TCM_022624 TCM_022624 TCM_024438 TCM_024438 TCM_025128 TCM_025128 TCM_025838 TCM_025838 TCM_025638 TCM_025638 TCM_026519 TCM_026519 TCM_026832 TCM_026832 TCM_026841 TCM_026841 TCM_031427 TCM_031427 TCM_031736 TCM_031736 TCM_033687 TCM_033687 TCM_034385 TCM_034385 TCM_034659 TCM_034659 TCM_035719 TCM_035719 TCM_035735 TCM_035735 TCM_043209 TCM_043209 TCM_043260 TCM_043260 TCM_045455 TCM_045455 TCM_013623 TCM_013623 TCM_043735 TCM_043735 TCM_014922 TCM_014922 TCM_012831 TCM_012831 TCM_016407 TCM_016407 TCM_026981 TCM_026981 TCM_029561 TCM_029561 TCM_030335 TCM_030335 TCM_029917 TCM_029917 TCM_029973 TCM_029973 TCM_038277 TCM_038277 TCM_040215 TCM_040215 TCM_040224 TCM_040224 TCM_040897 TCM_040897 TCM_041395 TCM_041395 TCM_038764 TCM_038764 TCM_002768 TCM_002768 TCM_001446 TCM_001446 TCM_000813 TCM_000813 TCM_000407 TCM_000407 TCM_000427 TCM_000427
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_003782Uncharacterized protein. (130 aa)
TCM_003387Uncharacterized protein. (102 aa)
TCM_003910Tetratricopeptide repeat (TPR)-like superfamily protein, putative isoform 1. (815 aa)
TCM_002491Sm domain-containing protein. (359 aa)
TCM_004356Splicing factor Prp18 family protein isoform 1. (415 aa)
TCM_046691Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (174 aa)
TCM_007427Splicing factor, putative. (1266 aa)
TCM_007259Pre-mRNA-processing protein 40B, putative. (1025 aa)
TCM_011316SWAP/surp domain-containing protein / ubiquitin family protein. (818 aa)
TCM_008921Uncharacterized protein. (111 aa)
TCM_011876Family of Uncharacterized protein function (DUF572). (310 aa)
TCM_018075Uncharacterized protein. (194 aa)
TCM_017644Uncharacterized protein. (209 aa)
TCM_018339CCHC-type domain-containing protein. (337 aa)
TCM_019842Family of Uncharacterized protein function. (315 aa)
TCM_020255Zinc finger family protein. (381 aa)
TCM_019401Uncharacterized protein. (167 aa)
TCM_020986MOS4-associated complex 3A. (523 aa)
TCM_019804CBF1-interacting co-repressor CIR isoform 1. (474 aa)
TCM_022302Hydroxyproline-rich glycoprotein family protein. (338 aa)
TCM_020947Splicing factor U2AF 50 kDa subunit, putative. (1032 aa)
TCM_022624Small nuclear ribonucleoprotein G. (80 aa)
TCM_024438Uncharacterized protein. (163 aa)
TCM_025128RNA-binding protein Luc7-like 1 isoform 1. (413 aa)
TCM_025838Microfibrillar-associated protein 1. (434 aa)
TCM_025638GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain. (859 aa)
TCM_026519Uncharacterized protein isoform 1. (539 aa)
TCM_026832O-Glycosyl hydrolases family 17 protein, putative isoform 1; Belongs to the glycosyl hydrolase 17 family. (612 aa)
TCM_026841D111/G-patch domain-containing protein. (298 aa)
TCM_031427Zinc finger (CCCH-type/C3HC4-type RING finger) family protein, putative. (322 aa)
TCM_031736JHL23J11.4 protein isoform 1. (470 aa)
TCM_033687Uncharacterized protein. (127 aa)
TCM_034385Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
TCM_034659Pre-mRNA-processing protein 40A isoform 3. (1041 aa)
TCM_035719Uncharacterized protein. (225 aa)
TCM_035735Uncharacterized protein. (143 aa)
TCM_043209Cwf18 isoform 1. (151 aa)
TCM_043260Splicing factor U2af large subunit A isoform 4. (596 aa)
TCM_045455Crooked neck protein / cell cycle protein, putative. (387 aa)
TCM_013623Uncharacterized protein. (114 aa)
TCM_043735U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (211 aa)
TCM_014922LUC7 N_terminus domain-containing protein isoform 1. (351 aa)
TCM_012831Uncharacterized protein. (294 aa)
TCM_016407Crooked neck protein / cell cycle protein, putative isoform 1. (701 aa)
TCM_026981Small nuclear ribonucleoprotein associated protein B. (291 aa)
TCM_029561Tetratricopeptide repeat-like superfamily protein, PRP39-2,PRP39-2, putative. (1166 aa)
TCM_030335Ubiquitin-specific protease family C19-related protein isoform 1. (461 aa)
TCM_029917Proline-rich spliceosome-associated family protein isoform 1. (606 aa)
TCM_029973Tetratricopeptide repeat-like superfamily protein. (1041 aa)
TCM_038277Zinc finger protein, putative isoform 1. (765 aa)
TCM_040215CCHC-type domain-containing protein. (271 aa)
TCM_040224Uncharacterized protein. (237 aa)
TCM_040897RNA-binding (RRM/RBD/RNP motifs) family protein. (124 aa)
TCM_041395Ribosomal protein S5/Elongation factor G/III/V family protein. (990 aa)
TCM_038764Uncharacterized protein. (434 aa)
TCM_002768Uncharacterized protein. (149 aa)
TCM_001446Tetratricopeptide repeat (TPR)-like superfamily protein, putative. (167 aa)
TCM_000813CCCH-type zinc fingerfamily protein with RNA-binding domain. (495 aa)
TCM_000407U1 small nuclear ribonucleoprotein 70 kDa. (468 aa)
TCM_000427U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (585 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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