STRINGSTRING
TCM_000043 TCM_000043 TCM_014548 TCM_014548 TCM_014814 TCM_014814 TCM_015454 TCM_015454 TCM_015537 TCM_015537 TCM_015830 TCM_015830 TCM_015822 TCM_015822 TCM_027415 TCM_027415 TCM_027418 TCM_027418 TCM_046750 TCM_046750 TCM_027417 TCM_027417 TCM_037053 TCM_037053 TCM_037248 TCM_037248 TCM_038358 TCM_038358 TCM_037083 TCM_037083 TCM_040771 TCM_040771 TCM_041300 TCM_041300 TCM_041469 TCM_041469 TCM_042083 TCM_042083 TCM_042039 TCM_042039 TCM_014100 TCM_014100 TCM_012278 TCM_012278 TCM_012331 TCM_012331 TCM_044782 TCM_044782 TCM_043331 TCM_043331 TCM_035065 TCM_035065 TCM_034910 TCM_034910 TCM_031646 TCM_031646 TCM_026293 TCM_026293 TCM_026258 TCM_026258 TCM_031662 TCM_031662 TCM_031306 TCM_031306 TCM_030964 TCM_030964 TCM_030969 TCM_030969 TCM_024996 TCM_024996 TCM_026742 TCM_026742 TCM_030630 TCM_030630 TCM_026731 TCM_026731 TCM_026137 TCM_026137 TCM_022980 TCM_022980 TCM_026138 TCM_026138 TCM_022844 TCM_022844 TCM_025836 TCM_025836 TCM_025856 TCM_025856 TCM_025463 TCM_025463 TCM_024495 TCM_024495 TCM_021924 TCM_021924 TCM_021299 TCM_021299 TCM_021404 TCM_021404 TCM_020232 TCM_020232 TCM_018409 TCM_018409 TCM_016880 TCM_016880 TCM_016930 TCM_016930 TCM_011364 TCM_011364 TCM_006895 TCM_006895 TCM_004901 TCM_004901 TCM_004453 TCM_004453 TCM_004850 TCM_004850 TCM_005006 TCM_005006 TCM_004849 TCM_004849 TCM_004848 TCM_004848 TCM_002662 TCM_002662 TCM_000203 TCM_000203 TCM_001169 TCM_001169
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_000043Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family. (938 aa)
TCM_014548DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (353 aa)
TCM_014814U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (345 aa)
TCM_0154543'-5' exonuclease domain-containing protein. (508 aa)
TCM_015537Calcium-binding endonuclease/exonuclease/phosphatase family. (445 aa)
TCM_015830Uncharacterized protein. (223 aa)
TCM_015822Glycine-rich protein isoform 1. (518 aa)
TCM_027415Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
TCM_027418Polynucleotidyl transferase, ribonuclease H-like superfamily protein isoform 1. (274 aa)
TCM_046750DNAse I-like superfamily protein. (406 aa)
TCM_027417CCR4-associated factor 1. (356 aa)
TCM_037053DNAse I-like superfamily protein isoform 1. (326 aa)
TCM_037248annotation not available (387 aa)
TCM_038358DNAse I-like superfamily protein, putative isoform 1. (975 aa)
TCM_037083Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (274 aa)
TCM_0407713'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
TCM_041300Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (280 aa)
TCM_041469DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2213 aa)
TCM_0420833'-5'-exoribonuclease family protein isoform 1. (256 aa)
TCM_042039Polynucleotidyl transferase, ribonuclease H-like superfamily protein, putative isoform 1. (251 aa)
TCM_014100Polynucleotidyl transferase, putative isoform 1. (519 aa)
TCM_012278DNAse I-like superfamily protein, putative isoform 1. (479 aa)
TCM_012331DNAse I-like superfamily protein, putative isoform 1. (473 aa)
TCM_044782Exonuclease domain-containing protein. (414 aa)
TCM_043331Polynucleotidyl transferase, putative. (252 aa)
TCM_035065DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
TCM_034910Carbon catabolite repressor protein 4, putative isoform 1. (584 aa)
TCM_031646Polynucleotidyl transferase, ribonuclease H-like superfamily protein, putative. (332 aa)
TCM_026293Uncharacterized protein. (423 aa)
TCM_026258F-box associated ubiquitination effector family protein, putative. (410 aa)
TCM_031662Polynucleotidyl transferase isoform 2. (278 aa)
TCM_031306Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (702 aa)
TCM_030964Polymerase gamma 2 isoform 4. (1160 aa)
TCM_030969DNA polymerase. (1097 aa)
TCM_024996DNAse I-like superfamily protein isoform 1. (602 aa)
TCM_026742Polynucleotidyl transferase isoform 1. (578 aa)
TCM_030630Poly(A)-specific ribonuclease PARN isoform 1. (726 aa)
TCM_026731DNA polymerase III polC-type, putative isoform 1. (338 aa)
TCM_0261373'-5' exonuclease domain-containing protein. (366 aa)
TCM_022980TatD related DNase. (319 aa)
TCM_026138Polynucleotidyl transferase, ribonuclease H-like superfamily protein. (212 aa)
TCM_022844Polynucleotidyl transferase. (285 aa)
TCM_025836Polyribonucleotide nucleotidyltransferase isoform 1. (946 aa)
TCM_025856Polynucleotidyl transferase, putative isoform 1. (920 aa)
TCM_0254633'-5'-exoribonuclease family protein isoform 1. (453 aa)
TCM_024495DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (535 aa)
TCM_021924Ribonuclease II, putative isoform 1. (795 aa)
TCM_021299DNA polymerase III polC-type, putative isoform 1. (339 aa)
TCM_021404Werner syndrome-like exonuclease, putative. (217 aa)
TCM_020232Werner syndrome-like exonuclease, putative. (298 aa)
TCM_018409Calcium-binding endonuclease/exonuclease/phosphatase family, putative. (188 aa)
TCM_016880C2H2L domain class transcription factor. (351 aa)
TCM_016930Polyribonucleotide nucleotidyltransferase, putative isoform 1. (980 aa)
TCM_0113643'-5' exonuclease, putative. (959 aa)
TCM_006895Polynucleotidyl transferase, putative. (205 aa)
TCM_0049013'-5' exonuclease domain-containing protein. (255 aa)
TCM_004453Exonuclease family protein isoform 1. (364 aa)
TCM_004850Polynucleotidyl transferase, putative. (201 aa)
TCM_005006Calcium-binding endonuclease/exonuclease/phosphatase family. (535 aa)
TCM_004849Uncharacterized protein. (154 aa)
TCM_004848Polynucleotidyl transferase, putative. (174 aa)
TCM_002662Poly(A)-specific ribonuclease PARN-like, putative isoform 2. (623 aa)
TCM_000203Endonuclease/exonuclease/phosphatase family protein. (616 aa)
TCM_001169DNA polymerase III polC-type isoform 1. (296 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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