42 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_043262	Uncharacterized protein; Belongs to the SKP1 family. (273 aa)
	TCM_000157	S phase kinase-associated protein 1; Belongs to the SKP1 family. (156 aa)
	TCM_000402	Cytochrome P450 superfamily protein isoform 2; Belongs to the cytochrome P450 family. (501 aa)
	TCM_001535	Copine family isoform 3. (407 aa)
	TCM_003734	Trichome birefringence-like 39. (360 aa)
	TCM_005706	Ethylene-responsive element binding factor 13, putative. (229 aa)
	TCM_005319	SKP1-like protein 21 isoform 1; Belongs to the SKP1 family. (371 aa)
	TCM_005333	Basic helix-loop-helix DNA-binding superfamily protein. (1279 aa)
	TCM_006613	S phase kinase-associated protein 1; Belongs to the SKP1 family. (156 aa)
	TCM_006150	Smg-4/UPF3 family protein, putative isoform 1. (514 aa)
	TCM_010688	G-protein coupled receptors,GTPase activators. (466 aa)
	TCM_016901	Myb domain protein 21. (194 aa)
	TCM_011854	Phytochrome and flowering time regulatory protein isoform 1. (871 aa)
	TCM_016953	Mitogen-activated protein kinase kinase 3 isoform 1. (518 aa)
	TCM_019165	GRAS family transcription factor family protein; Belongs to the GRAS family. (655 aa)
	TCM_020871	Ethylene-responsive transcription factor 1B. (214 aa)
	TCM_024428	Ankyrin repeat family protein / BTB/POZ domain-containing protein. (481 aa)
	TCM_025045	Ubiquitin-specific protease 12; Belongs to the peptidase C19 family. (1114 aa)
	TCM_025121	SKP1-like 11, putative. (119 aa)
	TCM_025849	LOB domain-containing protein 20. (236 aa)
	TCM_032076	Trichome birefringence-like 37. (358 aa)
	TCM_032077	Lustrin A-like, putative. (363 aa)
	TCM_033611	Ca(2)-dependent phospholipid-binding protein family isoform 1. (426 aa)
	TCM_033435	SKP1-like protein 1A, putative; Belongs to the SKP1 family. (170 aa)
	TCM_036423	SKP1-like protein 1A, putative; Belongs to the SKP1 family. (171 aa)
	TCM_043050	Regulator of nonsense transcripts 2 isoform 1. (1193 aa)
	TCM_044412	Ubiquitin-specific protease 13, putative. (144 aa)
	TCM_045556	WRKY DNA-binding protein 70, putative isoform 1. (295 aa)
	TCM_044465	Ubiquitin-specific protease 12 isoform 2; Belongs to the peptidase C19 family. (1146 aa)
	TCM_015202	SKP1-like protein 21 isoform 1; Belongs to the SKP1 family. (357 aa)
	TCM_015436	RNA-binding KH domain-containing protein. (675 aa)
	TCM_015799	Regulator of nonsense transcripts 1. (1266 aa)
	TCM_028841	Smg-4/UPF3 family protein, putative isoform 1. (523 aa)
	TCM_029015	SKP1-like 4; Belongs to the SKP1 family. (152 aa)
	TCM_016261	Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1. (643 aa)
	TCM_029120	Transcription initiation factor TFIID subunit A isoform 4. (672 aa)
	TCM_029724	Trichome birefringence-like 37 isoform 1. (363 aa)
	TCM_037519	RING-box 1. (118 aa)
	TCM_038389	Overexpressor of cationic peroxidase 3, putative. (433 aa)
	TCM_037821	Interactor of JAZ, putative isoform 1. (485 aa)
	TCM_041172	Ubiquitin-specific protease 12 isoform 1; Belongs to the peptidase C19 family. (1117 aa)
	TCM_041746	BTB/POZ domain-containing protein; Belongs to the SKP1 family. (98 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_000157	TCM_037519	A0A061DF70	A0A061GK71	S phase kinase-associated protein 1; Belongs to the SKP1 family.	RING-box 1.	0.977
TCM_000157	TCM_041746	A0A061DF70	A0A061GZZ8	S phase kinase-associated protein 1; Belongs to the SKP1 family.	BTB/POZ domain-containing protein; Belongs to the SKP1 family.	0.540
TCM_005319	TCM_037519	A0A061DV37	A0A061GK71	SKP1-like protein 21 isoform 1; Belongs to the SKP1 family.	RING-box 1.	0.858
TCM_005319	TCM_041746	A0A061DV37	A0A061GZZ8	SKP1-like protein 21 isoform 1; Belongs to the SKP1 family.	BTB/POZ domain-containing protein; Belongs to the SKP1 family.	0.540
TCM_006150	TCM_015799	A0A061DY66	A0A061G3G4	Smg-4/UPF3 family protein, putative isoform 1.	Regulator of nonsense transcripts 1.	0.994
TCM_006150	TCM_028841	A0A061DY66	A0A061GAH0	Smg-4/UPF3 family protein, putative isoform 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.903
TCM_006150	TCM_043050	A0A061DY66	A0A061FME2	Smg-4/UPF3 family protein, putative isoform 1.	Regulator of nonsense transcripts 2 isoform 1.	0.998
TCM_006613	TCM_037519	A0A061DY20	A0A061GK71	S phase kinase-associated protein 1; Belongs to the SKP1 family.	RING-box 1.	0.977
TCM_006613	TCM_041746	A0A061DY20	A0A061GZZ8	S phase kinase-associated protein 1; Belongs to the SKP1 family.	BTB/POZ domain-containing protein; Belongs to the SKP1 family.	0.540
TCM_011854	TCM_037821	A0A061EBX1	A0A061GUC4	Phytochrome and flowering time regulatory protein isoform 1.	Interactor of JAZ, putative isoform 1.	0.435
TCM_015202	TCM_037519	A0A061G106	A0A061GK71	SKP1-like protein 21 isoform 1; Belongs to the SKP1 family.	RING-box 1.	0.858
TCM_015202	TCM_041746	A0A061G106	A0A061GZZ8	SKP1-like protein 21 isoform 1; Belongs to the SKP1 family.	BTB/POZ domain-containing protein; Belongs to the SKP1 family.	0.540
TCM_015799	TCM_006150	A0A061G3G4	A0A061DY66	Regulator of nonsense transcripts 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.994
TCM_015799	TCM_028841	A0A061G3G4	A0A061GAH0	Regulator of nonsense transcripts 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.994
TCM_015799	TCM_043050	A0A061G3G4	A0A061FME2	Regulator of nonsense transcripts 1.	Regulator of nonsense transcripts 2 isoform 1.	0.999
TCM_025121	TCM_037519	A0A061EYL5	A0A061GK71	SKP1-like 11, putative.	RING-box 1.	0.858
TCM_025121	TCM_041746	A0A061EYL5	A0A061GZZ8	SKP1-like 11, putative.	BTB/POZ domain-containing protein; Belongs to the SKP1 family.	0.540
TCM_028841	TCM_006150	A0A061GAH0	A0A061DY66	Smg-4/UPF3 family protein, putative isoform 1.	Smg-4/UPF3 family protein, putative isoform 1.	0.903
TCM_028841	TCM_015799	A0A061GAH0	A0A061G3G4	Smg-4/UPF3 family protein, putative isoform 1.	Regulator of nonsense transcripts 1.	0.994
TCM_028841	TCM_043050	A0A061GAH0	A0A061FME2	Smg-4/UPF3 family protein, putative isoform 1.	Regulator of nonsense transcripts 2 isoform 1.	0.998