69 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TCM_004387	Chloroplast stem-loop binding protein of 41 kDa isoform 1. (400 aa)
	TCM_003999	Uncharacterized protein. (66 aa)
	TCM_017045	Pentatricopeptide repeat (PPR-like) superfamily protein, putative. (741 aa)
	TCM_018488	Ribosomal protein S4; Belongs to the universal ribosomal protein uS4 family. (197 aa)
	TCM_019682	Serine/threonine protein kinase 2; Belongs to the protein kinase superfamily. (488 aa)
	TCM_020332	Homeodomain-like superfamily protein isoform 1. (287 aa)
	TCM_018699	Uncharacterized protein. (181 aa)
	TCM_021231	Eukaryotic translation initiation factor 2 gamma subunit, GAMMA isoform 2. (489 aa)
	TCM_020132	Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (337 aa)
	TCM_022100	Pre-mRNA splicing factor-related. (116 aa)
	TCM_026458	NDH-dependent cyclic electron flow 5, putative. (389 aa)
	TCM_026797	Chloroplast RNA binding. (379 aa)
	TCM_026634	Zinc finger isoform 1. (947 aa)
	TCM_033542	5'-3' exoribonuclease 3. (364 aa)
	TCM_032899	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1. (1279 aa)
	TCM_034205	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (1110 aa)
	TCM_035071	Eukaryotic translation initiation factor 2 subunit 3, putative. (190 aa)
	TCM_035320	RING/FYVE/PHD zinc finger superfamily protein, putative. (696 aa)
	TCM_035807	Nucleic acid-binding proteins superfamily isoform 2. (521 aa)
	TCM_000218	Zinc finger family protein, putative isoform 1. (364 aa)
	TCM_000640	Subtilisin-like serine endopeptidase family protein; Belongs to the peptidase S8 family. (779 aa)
	TCM_001299	Ribosomal RNA processing 4. (319 aa)
	TCM_000849	Uncharacterized protein. (85 aa)
	TCM_001258	RNA polymerase II, Rpb4, core protein isoform 1. (138 aa)
	TCM_001230	Myosin-H heavy chain isoform 1. (348 aa)
	TCM_000425	RNA-binding family protein isoform 1. (367 aa)
	TCM_002331	Pentatricopeptide repeat-containing protein, putative isoform 1. (909 aa)
	TCM_003433	Translation factor GUF1 homolog, chloroplastic; Promotes chloroplast protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. (704 aa)
	TCM_000641	Subtilisin-like serine endopeptidase family protein; Belongs to the peptidase S8 family. (767 aa)
	TCM_036535	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform 1. (1168 aa)
	TCM_034251	Uncharacterized protein. (77 aa)
	TCM_043324	RNA-binding family protein with retrovirus zinc finger-like domain isoform 1. (276 aa)
	TCM_035811	Uncharacterized protein. (169 aa)
	TCM_036034	NAC domain protein, IPR003441. (418 aa)
	TCM_017290	DUF4210 domain-containing protein. (735 aa)
	TCM_036364	Transcription factor. (321 aa)
	TCM_045572	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (485 aa)
	TCM_012217	2-oxoglutarate and Fe(II)-dependent oxygenase superfamily protein, putative isoform 1. (549 aa)
	TCM_012160	Uncharacterized protein. (75 aa)
	TCM_013517	Serine/threonine-protein kinase AtPK2/AtPK19 isoform 1; Belongs to the protein kinase superfamily. (439 aa)
	TCM_012652	5'-3' exoribonuclease 3. (189 aa)
	TCM_014118	Eukaryotic translation initiation factor 5A-1 isoform 2. (184 aa)
	TCM_013934	Ribosomal protein S4; Belongs to the universal ribosomal protein uS4 family. (197 aa)
	TCM_014549	Relative of early flowering 6, putative isoform 1. (1649 aa)
	TCM_014721	DUF4210 domain-containing protein. (729 aa)
	TCM_016289	ARID/BRIGHT DNA-binding domain,ELM2 domain protein, putative. (616 aa)
	TCM_028841	Smg-4/UPF3 family protein, putative isoform 1. (523 aa)
	TCM_028772	Golgin candidate 5 isoform 1. (964 aa)
	TCM_030428	Pentatricopeptide (PPR) repeat-containing-like protein. (418 aa)
	TCM_037062	Eukaryotic translation initiation factor 5A. (160 aa)
	TCM_030422	Pentatricopeptide (PPR) repeat-containing protein. (700 aa)
	TCM_039151	Tetratricopeptide repeat (TPR)-like superfamily protein. (845 aa)
	TCM_040901	General control non-repressible 4. (724 aa)
	TCM_041684	RNA-binding family protein isoform 1. (390 aa)
	TCM_041752	DNA-directed RNA polymerase II isoform 1. (176 aa)
	TCM_039723	RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1. (990 aa)
	TCM_011621	Eukaryotic translation initiation factor 5A. (159 aa)
	TCM_045800	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner. (1068 aa)
	TCM_011796	Zinc knuckle family protein. (417 aa)
	TCM_011016	WD repeat-containing protein 42A isoform 1. (1606 aa)
	TCM_006720	Pentatricopeptide repeat-containing protein, putative. (1110 aa)
	TCM_008392	RNA polymerase II C-terminal domain phosphatase-like 3, putative. (1290 aa)
	TCM_008068	Pre-mRNA splicing factor-related. (1033 aa)
	TCM_005467	Nucleotidyltransferase family protein isoform 1. (722 aa)
	TCM_007183	Pentatricopeptide repeat-containing protein, putative isoform 1. (818 aa)
	TCM_006150	Smg-4/UPF3 family protein, putative isoform 1. (514 aa)
	TCM_006420	Partner of Y14-MAGO isoform 1. (232 aa)
	TCM_005304	ARID/BRIGHT DNA-binding domain,ELM2 domain protein, putative isoform 3. (676 aa)
	TCM_004634	HSP20-like chaperones superfamily protein isoform 2. (188 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_000425	TCM_008068	A0A061DMF9	A0A061E2W4	RNA-binding family protein isoform 1.	Pre-mRNA splicing factor-related.	0.780
TCM_000425	TCM_022100	A0A061DMF9	A0A061ET01	RNA-binding family protein isoform 1.	Pre-mRNA splicing factor-related.	0.780
TCM_000849	TCM_001299	A0A061DIQ9	A0A061DIE4	Uncharacterized protein.	Ribosomal RNA processing 4.	0.741
TCM_000849	TCM_003433	A0A061DIQ9	A0A061DN87	Uncharacterized protein.	Translation factor GUF1 homolog, chloroplastic; Promotes chloroplast protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes.	0.546
TCM_000849	TCM_011621	A0A061DIQ9	A0A061EBN4	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.788
TCM_000849	TCM_013934	A0A061DIQ9	A0A061FX13	Uncharacterized protein.	Ribosomal protein S4; Belongs to the universal ribosomal protein uS4 family.	0.549
TCM_000849	TCM_014118	A0A061DIQ9	A0A061FWM4	Uncharacterized protein.	Eukaryotic translation initiation factor 5A-1 isoform 2.	0.788
TCM_000849	TCM_018488	A0A061DIQ9	A0A061EES1	Uncharacterized protein.	Ribosomal protein S4; Belongs to the universal ribosomal protein uS4 family.	0.549
TCM_000849	TCM_020132	A0A061DIQ9	A0A061ERR4	Uncharacterized protein.	Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.781
TCM_000849	TCM_021231	A0A061DIQ9	A0A061EPF4	Uncharacterized protein.	Eukaryotic translation initiation factor 2 gamma subunit, GAMMA isoform 2.	0.817
TCM_000849	TCM_035071	A0A061DIQ9	A0A061FGR6	Uncharacterized protein.	Eukaryotic translation initiation factor 2 subunit 3, putative.	0.817
TCM_000849	TCM_035807	A0A061DIQ9	A0A061FIY7	Uncharacterized protein.	Nucleic acid-binding proteins superfamily isoform 2.	0.833
TCM_000849	TCM_037062	A0A061DIQ9	A0A061GK81	Uncharacterized protein.	Eukaryotic translation initiation factor 5A.	0.788
TCM_000849	TCM_039723	A0A061DIQ9	A0A061GYG9	Uncharacterized protein.	RNA helicase, ATP-dependent, SK12/DOB1 protein isoform 1.	0.653
TCM_000849	TCM_040901	A0A061DIQ9	A0A061GSP8	Uncharacterized protein.	General control non-repressible 4.	0.489
TCM_000849	TCM_045800	A0A061DIQ9	S1SI39	Uncharacterized protein.	Translation factor GUF1 homolog, mitochondrial; Promotes mitochondrial protein synthesis. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Binds to mitochondrial ribosomes in a GTP-dependent manner.	0.546
TCM_001258	TCM_008392	A0A061DJ22	A0A061E5T0	RNA polymerase II, Rpb4, core protein isoform 1.	RNA polymerase II C-terminal domain phosphatase-like 3, putative.	0.812
TCM_001258	TCM_011016	A0A061DJ22	A0A061E9L9	RNA polymerase II, Rpb4, core protein isoform 1.	WD repeat-containing protein 42A isoform 1.	0.769
TCM_001258	TCM_041752	A0A061DJ22	A0A061GWQ3	RNA polymerase II, Rpb4, core protein isoform 1.	DNA-directed RNA polymerase II isoform 1.	0.966
TCM_001299	TCM_000849	A0A061DIE4	A0A061DIQ9	Ribosomal RNA processing 4.	Uncharacterized protein.	0.741