25 items (Theobroma cacao) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

gene neighborhood

gene fusions

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protein homology

Your Input:
	TCM_001299	Ribosomal RNA processing 4. (319 aa)
	TCM_002348	Uncharacterized protein. (108 aa)
	TCM_006944	Cleavage and polyadenylation specificity factor 73-I. (694 aa)
	TCM_005208	3'-5'-exoribonuclease family protein isoform 1. (316 aa)
	TCM_006006	ARM repeat superfamily protein, putative isoform 1. (1146 aa)
	TCM_011055	Cleavage and polyadenylation specificity factor 73 kDa subunit-II. (657 aa)
	TCM_011364	3'-5' exonuclease, putative. (959 aa)
	TCM_021590	ARM repeat superfamily protein, putative isoform 1. (943 aa)
	TCM_024636	3'-5'-exoribonuclease family protein. (302 aa)
	TCM_025463	3'-5'-exoribonuclease family protein isoform 1. (453 aa)
	TCM_025856	Polynucleotidyl transferase, putative isoform 1. (920 aa)
	TCM_024460	NAP57 isoform 1. (614 aa)
	TCM_036592	snRNA-activating protein complex subunit 3 isoform 1. (467 aa)
	TCM_043261	3'-5'-exoribonuclease family protein isoform 7. (288 aa)
	TCM_045378	Beta-Casp domain-containing protein. (688 aa)
	TCM_014814	U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (345 aa)
	TCM_012055	PNAS-3 related isoform 1. (240 aa)
	TCM_014448	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (186 aa)
	TCM_037188	Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
	TCM_029425	Nucleolar RNA-binding Nop10p family protein. (139 aa)
	TCM_037826	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative. (315 aa)
	TCM_038145	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein, putative. (287 aa)
	TCM_040771	3'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
	TCM_040949	Embryo defective 2739 isoform 1. (525 aa)
	TCM_042083	3'-5'-exoribonuclease family protein isoform 1. (256 aa)

Your Current Organism:

Theobroma cacao

NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TCM_001299	TCM_002348	A0A061DIE4	A0A061DL98	Ribosomal RNA processing 4.	Uncharacterized protein.	0.989
TCM_001299	TCM_005208	A0A061DIE4	A0A061E0L1	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.998
TCM_001299	TCM_011364	A0A061DIE4	A0A061E914	Ribosomal RNA processing 4.	3'-5' exonuclease, putative.	0.992
TCM_001299	TCM_012055	A0A061DIE4	A0A061G112	Ribosomal RNA processing 4.	PNAS-3 related isoform 1.	0.999
TCM_001299	TCM_014448	A0A061DIE4	A0A061G5E0	Ribosomal RNA processing 4.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.616
TCM_001299	TCM_024636	A0A061DIE4	A0A061EX61	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein.	0.999
TCM_001299	TCM_025463	A0A061DIE4	A0A061EZ56	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.993
TCM_001299	TCM_025856	A0A061DIE4	A0A061EZH4	Ribosomal RNA processing 4.	Polynucleotidyl transferase, putative isoform 1.	0.992
TCM_001299	TCM_037188	A0A061DIE4	A0A061GJP9	Ribosomal RNA processing 4.	Ribosomal protein S5 domain 2-like superfamily protein isoform 1.	0.999
TCM_001299	TCM_040771	A0A061DIE4	A0A061GTD2	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein, putative isoform 1.	0.993
TCM_001299	TCM_042083	A0A061DIE4	A0A061GX12	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 1.	0.997
TCM_001299	TCM_043261	A0A061DIE4	A0A061FPF2	Ribosomal RNA processing 4.	3'-5'-exoribonuclease family protein isoform 7.	0.995
TCM_002348	TCM_001299	A0A061DL98	A0A061DIE4	Uncharacterized protein.	Ribosomal RNA processing 4.	0.989
TCM_002348	TCM_005208	A0A061DL98	A0A061E0L1	Uncharacterized protein.	3'-5'-exoribonuclease family protein isoform 1.	0.979
TCM_002348	TCM_011364	A0A061DL98	A0A061E914	Uncharacterized protein.	3'-5' exonuclease, putative.	0.943
TCM_002348	TCM_012055	A0A061DL98	A0A061G112	Uncharacterized protein.	PNAS-3 related isoform 1.	0.987
TCM_002348	TCM_014448	A0A061DL98	A0A061G5E0	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.583
TCM_002348	TCM_024636	A0A061DL98	A0A061EX61	Uncharacterized protein.	3'-5'-exoribonuclease family protein.	0.985
TCM_002348	TCM_025463	A0A061DL98	A0A061EZ56	Uncharacterized protein.	3'-5'-exoribonuclease family protein isoform 1.	0.958
TCM_002348	TCM_025856	A0A061DL98	A0A061EZH4	Uncharacterized protein.	Polynucleotidyl transferase, putative isoform 1.	0.943