STRINGSTRING
TCM_040771 TCM_040771 TCM_033542 TCM_033542 TCM_025856 TCM_025856 TCM_001607 TCM_001607 TCM_002348 TCM_002348 TCM_025327 TCM_025327 TCM_042083 TCM_042083 TCM_025463 TCM_025463 TCM_024636 TCM_024636 TCM_022360 TCM_022360 TCM_001299 TCM_001299 TCM_037188 TCM_037188 TCM_012055 TCM_012055 TCM_012652 TCM_012652 TCM_011364 TCM_011364 TCM_005208 TCM_005208 TCM_034205 TCM_034205 TCM_043261 TCM_043261 TCM_000043 TCM_000043
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TCM_0407713'-5'-exoribonuclease family protein, putative isoform 1. (420 aa)
TCM_0335425'-3' exoribonuclease 3. (364 aa)
TCM_025856Polynucleotidyl transferase, putative isoform 1. (920 aa)
TCM_001607Eukaryotic release factor 1 (ERF1) family protein. (116 aa)
TCM_002348Uncharacterized protein. (108 aa)
TCM_025327Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (377 aa)
TCM_0420833'-5'-exoribonuclease family protein isoform 1. (256 aa)
TCM_0254633'-5'-exoribonuclease family protein isoform 1. (453 aa)
TCM_0246363'-5'-exoribonuclease family protein. (302 aa)
TCM_022360Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (370 aa)
TCM_001299Ribosomal RNA processing 4. (319 aa)
TCM_037188Ribosomal protein S5 domain 2-like superfamily protein isoform 1. (240 aa)
TCM_012055PNAS-3 related isoform 1. (240 aa)
TCM_0126525'-3' exoribonuclease 3. (189 aa)
TCM_0113643'-5' exonuclease, putative. (959 aa)
TCM_0052083'-5'-exoribonuclease family protein isoform 1. (316 aa)
TCM_0342055'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (1110 aa)
TCM_0432613'-5'-exoribonuclease family protein isoform 7. (288 aa)
TCM_000043Ribonuclease II family protein isoform 1; Belongs to the RNR ribonuclease family. (938 aa)
Your Current Organism:
Theobroma cacao
NCBI taxonomy Id: 3641
Other names: T. cacao, Theobroma cacao L., cacao, chocolate, cocoa
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